RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 CRY2Q49AN0 593 aa13.16□□□□□ -0.3
NEDD9-210ENST00000505589 KIF6Q6ZMV9 814 aa13.16□□□□□ -0.3
NEDD9-210ENST00000505589 PHACTR3Q96KR7 559 aa13.16□□□□□ -0.3
NEDD9-210ENST00000505589 CAPNS2Q96L46 248 aa13.16□□□□□ -0.3
NEDD9-210ENST00000505589 CRAMP1Q96RY5 1269 aa13.16□□□□□ -0.3
NEDD9-210ENST00000505589 ARFGEF2Q9Y6D5 1785 aa13.15□□□□□ -0.3
NEDD9-210ENST00000505589 SLC34A2O95436 690 aa13.15□□□□□ -0.3
NEDD9-210ENST00000505589 U2AF1L5P0DN76 240 aaPredicted RBP13.15□□□□□ -0.3
NEDD9-210ENST00000505589 RGS19P49795 217 aa13.15□□□□□ -0.3
NEDD9-210ENST00000505589 U2AF1Q01081 240 aaKnown RBP eCLIP13.15□□□□□ -0.3
NEDD9-210ENST00000505589 PPP1R42Q7Z4L9 355 aa13.15□□□□□ -0.3
NEDD9-210ENST00000505589 NIM1KQ8IY84 436 aa13.15□□□□□ -0.3
NEDD9-210ENST00000505589 HHIPL1Q96JK4 782 aa13.15□□□□□ -0.3
NEDD9-210ENST00000505589 NLRP3Q96P20 1036 aa13.15□□□□□ -0.3
NEDD9-210ENST00000505589 RSPH6AQ9H0K4 717 aa13.15□□□□□ -0.3
NEDD9-210ENST00000505589 PNNQ9H307 717 aaKnown RBP13.15□□□□□ -0.3
NEDD9-210ENST00000505589 ADARB2Q9NS39 739 aaKnown RBP13.15□□□□□ -0.3
NEDD9-210ENST00000505589 CCDC85CA6NKD9 419 aa13.14□□□□□ -0.31
NEDD9-210ENST00000505589 PIP4K2AP48426 406 aaPredicted RBP13.14□□□□□ -0.31
NEDD9-210ENST00000505589 ZC3H15Q8WU90 426 aaKnown RBP13.14□□□□□ -0.31
NEDD9-210ENST00000505589 TLL2Q9Y6L7 1015 aa13.14□□□□□ -0.31
NEDD9-210ENST00000505589 NBPF26B4DH59 902 aa13.13□□□□□ -0.31
NEDD9-210ENST00000505589 HLFQ16534 295 aa13.13□□□□□ -0.31
NEDD9-210ENST00000505589 FAM161AQ3B820 660 aa13.13□□□□□ -0.31
NEDD9-210ENST00000505589 PARP10Q53GL7 1025 aa13.13□□□□□ -0.31
NEDD9-210ENST00000505589 NBPF10Q6P3W6 841 aaKnown RBP13.13□□□□□ -0.31
NEDD9-210ENST00000505589 MCM10Q7L590 875 aa13.13□□□□□ -0.31
NEDD9-210ENST00000505589 NBPF15Q8N660 670 aa13.13□□□□□ -0.31
NEDD9-210ENST00000505589 COL11A2P13942 1736 aaPredicted RBP13.13□□□□□ -0.31
NEDD9-210ENST00000505589 BBOX1O75936 387 aa13.12□□□□□ -0.31
NEDD9-210ENST00000505589 EPS15P42566 896 aa13.12□□□□□ -0.31
NEDD9-210ENST00000505589 SCNN1DP51172 638 aa13.12□□□□□ -0.31
NEDD9-210ENST00000505589 OLFM4Q6UX06 510 aa13.12□□□□□ -0.31
NEDD9-210ENST00000505589 MAP3K15Q6ZN16 1313 aa13.12□□□□□ -0.31
NEDD9-210ENST00000505589 IBTKQ9P2D0 1353 aaPredicted RBP13.11□□□□□ -0.31
NEDD9-210ENST00000505589 PRAMEF22A3QJZ6 481 aa13.11□□□□□ -0.31
NEDD9-210ENST00000505589 PPEF1O14829 653 aaPredicted RBP13.11□□□□□ -0.31
NEDD9-210ENST00000505589 PPIP5K2O43314 1243 aa13.11□□□□□ -0.31
NEDD9-210ENST00000505589 GRM1Q13255 1194 aa13.11□□□□□ -0.31
NEDD9-210ENST00000505589 TNIP1Q15025 636 aa13.11□□□□□ -0.31
NEDD9-210ENST00000505589 CYP4F22Q6NT55 531 aa13.11□□□□□ -0.31
NEDD9-210ENST00000505589 NGEFQ8N5V2 710 aa13.11□□□□□ -0.31
NEDD9-210ENST00000505589 ZNRF3Q9ULT6 936 aa13.11□□□□□ -0.31
NEDD9-210ENST00000505589 CDHR2Q9BYE9 1310 aa13.11□□□□□ -0.31
NEDD9-210ENST00000505589 CACNA1SQ13698 1873 aa13.1□□□□□ -0.31
NEDD9-210ENST00000505589 SIPA1L3O60292 1781 aaPredicted RBP13.1□□□□□ -0.31
NEDD9-210ENST00000505589 BCORQ6W2J9 1755 aa13.1□□□□□ -0.31
NEDD9-210ENST00000505589 BRPF1P55201 1214 aaPredicted RBP13.1□□□□□ -0.31
NEDD9-210ENST00000505589 CNGB1Q14028 1251 aaPredicted RBP13.1□□□□□ -0.31
NEDD9-210ENST00000505589 CST9Q5W186 159 aa13.1□□□□□ -0.31
NEDD9-210ENST00000505589 CDC37L1Q7L3B6 337 aa13.1□□□□□ -0.31
NEDD9-210ENST00000505589 SAPCD2Q86UD0 394 aa13.1□□□□□ -0.31
NEDD9-210ENST00000505589 NUTM1Q86Y26 1132 aa13.1□□□□□ -0.31
NEDD9-210ENST00000505589 BCL2L13Q9BXK5 485 aa13.1□□□□□ -0.31
NEDD9-210ENST00000505589 GPRC5DQ9NZD1 345 aa13.1□□□□□ -0.31
NEDD9-210ENST00000505589 RRP7AQ9Y3A4 280 aaKnown RBP13.1□□□□□ -0.31
NEDD9-210ENST00000505589 ATP6V0A2Q9Y487 856 aa13.1□□□□□ -0.31
NEDD9-210ENST00000505589 ERBB4Q15303 1308 aa13.1□□□□□ -0.31
NEDD9-210ENST00000505589 H7C1D1 291 aa13.09□□□□□ -0.31
NEDD9-210ENST00000505589 CELF2O95319 508 aaKnown RBP13.09□□□□□ -0.31
NEDD9-210ENST00000505589 RIC1Q4ADV7 1423 aa13.09□□□□□ -0.31
NEDD9-210ENST00000505589 HSP90AB3PQ58FF7 597 aa13.09□□□□□ -0.31
NEDD9-210ENST00000505589 SLC10A5Q5PT55 438 aa13.09□□□□□ -0.31
NEDD9-210ENST00000505589 GIGYF2Q6Y7W6 1299 aaKnown RBP13.09□□□□□ -0.31
NEDD9-210ENST00000505589 PGAP2Q9UHJ9 254 aa13.09□□□□□ -0.31
NEDD9-210ENST00000505589 COL3A1P02461 1466 aaPredicted RBP13.09□□□□□ -0.31
NEDD9-210ENST00000505589 ADAMTSL1Q8N6G6 1762 aa13.08□□□□□ -0.32
NEDD9-210ENST00000505589 NOGQ13253 232 aa13.08□□□□□ -0.32
NEDD9-210ENST00000505589 CIAPIN1Q6FI81 312 aa13.08□□□□□ -0.32
NEDD9-210ENST00000505589 TMC4Q7Z404 712 aa13.08□□□□□ -0.32
NEDD9-210ENST00000505589 SP8Q8IXZ3 490 aa13.08□□□□□ -0.32
NEDD9-210ENST00000505589 ZNF34Q8IZ26 560 aa13.08□□□□□ -0.32
NEDD9-210ENST00000505589 CFAP44Q96MT7 982 aa13.08□□□□□ -0.32
NEDD9-210ENST00000505589 MYL6BP14649 208 aa13.07□□□□□ -0.32
NEDD9-210ENST00000505589 DCTN1Q14203 1278 aa13.07□□□□□ -0.32
NEDD9-210ENST00000505589 SUSD4Q5VX71 490 aa13.07□□□□□ -0.32
NEDD9-210ENST00000505589 DPP8Q6V1X1 898 aaPredicted RBP13.07□□□□□ -0.32
NEDD9-210ENST00000505589 MPNDQ8N594 471 aa13.07□□□□□ -0.32
NEDD9-210ENST00000505589 UTP14AQ9BVJ6 771 aaKnown RBP13.07□□□□□ -0.32
NEDD9-210ENST00000505589 RTFDC1Q9BY42 306 aaPredicted RBP13.07□□□□□ -0.32
NEDD9-210ENST00000505589 TCERG1O14776 1098 aaKnown RBP13.06□□□□□ -0.32
NEDD9-210ENST00000505589 GPTP24298 496 aa13.06□□□□□ -0.32
NEDD9-210ENST00000505589 EIF4A1P60842 406 aaKnown RBP13.06□□□□□ -0.32
NEDD9-210ENST00000505589 CXCL9Q07325 125 aa13.06□□□□□ -0.32
NEDD9-210ENST00000505589 DDX46Q7L014 1031 aaKnown RBP13.06□□□□□ -0.32
NEDD9-210ENST00000505589 MIS18AQ9NYP9 233 aa13.06□□□□□ -0.32
NEDD9-210ENST00000505589 TRAF5O00463 557 aa13.05□□□□□ -0.32
NEDD9-210ENST00000505589 AOC3Q16853 763 aa13.05□□□□□ -0.32
NEDD9-210ENST00000505589 REM2Q8IYK8 340 aaPredicted RBP13.05□□□□□ -0.32
NEDD9-210ENST00000505589 DPF2Q92785 391 aa13.05□□□□□ -0.32
NEDD9-210ENST00000505589 CCDC102AQ96A19 550 aa13.05□□□□□ -0.32
NEDD9-210ENST00000505589 MCOLN1Q9GZU1 580 aa13.05□□□□□ -0.32
NEDD9-210ENST00000505589 ZBTB3Q9H5J0 574 aa13.05□□□□□ -0.32
NEDD9-210ENST00000505589 BABAM1Q9NWV8 329 aa13.05□□□□□ -0.32
NEDD9-210ENST00000505589 SNED1Q8TER0 1413 aa13.05□□□□□ -0.32
NEDD9-210ENST00000505589 AOC2O75106 756 aa13.04□□□□□ -0.32
NEDD9-210ENST00000505589 NTSR2O95665 410 aa13.04□□□□□ -0.32
NEDD9-210ENST00000505589 PPP2R1AP30153 589 aa13.04□□□□□ -0.32
NEDD9-210ENST00000505589 KIAA2012Q0VF49 1180 aa13.04□□□□□ -0.32
NEDD9-210ENST00000505589 DGKZQ13574 1117 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms