RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 ANKRD13DQ6ZTN6 518 aa12.7□□□□□ -0.38
HDAC3-214ENST00000495485 DZIP3Q86Y13 1208 aaKnown RBP12.7□□□□□ -0.38
HDAC3-214ENST00000495485 DDRGK1Q96HY6 314 aa12.7□□□□□ -0.38
HDAC3-214ENST00000495485 USP44Q9H0E7 712 aa12.7□□□□□ -0.38
HDAC3-214ENST00000495485 PRAMEF22A3QJZ6 481 aa12.69□□□□□ -0.38
HDAC3-214ENST00000495485 NBPF26B4DH59 902 aa12.69□□□□□ -0.38
HDAC3-214ENST00000495485 MYL6BP14649 208 aa12.69□□□□□ -0.38
HDAC3-214ENST00000495485 AIMP1Q12904 312 aaKnown RBP12.69□□□□□ -0.38
HDAC3-214ENST00000495485 NBPF10Q6P3W6 841 aaKnown RBP12.69□□□□□ -0.38
HDAC3-214ENST00000495485 SIRT2Q8IXJ6 389 aa12.69□□□□□ -0.38
HDAC3-214ENST00000495485 NBPF15Q8N660 670 aa12.69□□□□□ -0.38
HDAC3-214ENST00000495485 SGIP1Q9BQI5 828 aa12.69□□□□□ -0.38
HDAC3-214ENST00000495485 ADCY9O60503 1353 aa12.69□□□□□ -0.38
HDAC3-214ENST00000495485 MAP3K15Q6ZN16 1313 aa12.68□□□□□ -0.38
HDAC3-214ENST00000495485 RAB11FIP3O75154 756 aa12.68□□□□□ -0.38
HDAC3-214ENST00000495485 ZBTB7AO95365 584 aa12.68□□□□□ -0.38
HDAC3-214ENST00000495485 PTGER2P43116 358 aa12.68□□□□□ -0.38
HDAC3-214ENST00000495485 PDIA6Q15084 440 aa12.68□□□□□ -0.38
HDAC3-214ENST00000495485 COPS6Q7L5N1 327 aa12.68□□□□□ -0.38
HDAC3-214ENST00000495485 AMIGO3Q86WK7 504 aa12.68□□□□□ -0.38
HDAC3-214ENST00000495485 XAGE3Q8WTP9 111 aa12.68□□□□□ -0.38
HDAC3-214ENST00000495485 LNPKQ9C0E8 428 aa12.68□□□□□ -0.38
HDAC3-214ENST00000495485 PPP1R1BQ9UD71 204 aaPredicted RBP12.68□□□□□ -0.38
HDAC3-214ENST00000495485 PARP3Q9Y6F1 533 aa12.68□□□□□ -0.38
HDAC3-214ENST00000495485 KIF13BQ9NQT8 1826 aa12.67□□□□□ -0.38
HDAC3-214ENST00000495485 CAMTA2O94983 1202 aa12.67□□□□□ -0.38
HDAC3-214ENST00000495485 ANXA1P04083 346 aa12.67□□□□□ -0.38
HDAC3-214ENST00000495485 C8orf34Q49A92 452 aa12.67□□□□□ -0.38
HDAC3-214ENST00000495485 USPL1Q5W0Q7 1092 aa12.67□□□□□ -0.38
HDAC3-214ENST00000495485 LRP10Q7Z4F1 713 aa12.67□□□□□ -0.38
HDAC3-214ENST00000495485 PLBD2Q8NHP8 589 aa12.67□□□□□ -0.38
HDAC3-214ENST00000495485 ARXQ96QS3 562 aa12.67□□□□□ -0.38
HDAC3-214ENST00000495485 METTL22Q9BUU2 404 aaPredicted RBP12.67□□□□□ -0.38
HDAC3-214ENST00000495485 ZNF330Q9Y3S2 320 aaPredicted RBP12.67□□□□□ -0.38
HDAC3-214ENST00000495485 LRRFIP2Q9Y608 721 aaKnown RBP12.67□□□□□ -0.38
HDAC3-214ENST00000495485 CARMIL3Q8ND23 1372 aa12.67□□□□□ -0.38
HDAC3-214ENST00000495485 ANKRD36CQ5JPF3 1778 aa12.66□□□□□ -0.38
HDAC3-214ENST00000495485 NRXN2Q9P2S2 1712 aa12.66□□□□□ -0.38
HDAC3-214ENST00000495485 TM4SF1P30408 202 aa12.66□□□□□ -0.38
HDAC3-214ENST00000495485 PROSER3Q2NL68 480 aa12.66□□□□□ -0.38
HDAC3-214ENST00000495485 BMP2KLQ5H9B9 411 aa12.66□□□□□ -0.38
HDAC3-214ENST00000495485 GIGYF2Q6Y7W6 1299 aaKnown RBP12.66□□□□□ -0.38
HDAC3-214ENST00000495485 SETDB2Q96T68 719 aa12.66□□□□□ -0.38
HDAC3-214ENST00000495485 LRRCC1Q9C099 1032 aa12.66□□□□□ -0.38
HDAC3-214ENST00000495485 PDGFDQ9GZP0 370 aaPredicted RBP12.66□□□□□ -0.38
HDAC3-214ENST00000495485 ATF5Q9Y2D1 282 aaPredicted RBP12.66□□□□□ -0.38
HDAC3-214ENST00000495485 CD2APQ9Y5K6 639 aa12.66□□□□□ -0.38
HDAC3-214ENST00000495485 GRM8O00222 908 aa12.65□□□□□ -0.38
HDAC3-214ENST00000495485 PARP10Q53GL7 1025 aa12.65□□□□□ -0.38
HDAC3-214ENST00000495485 CASC1Q6TDU7 716 aa12.65□□□□□ -0.38
HDAC3-214ENST00000495485 SKAP1Q86WV1 359 aa12.65□□□□□ -0.38
HDAC3-214ENST00000495485 ERC1Q8IUD2 1116 aa12.65□□□□□ -0.38
HDAC3-214ENST00000495485 SSH3Q8TE77 659 aa12.65□□□□□ -0.38
HDAC3-214ENST00000495485 NYXQ9GZU5 481 aa12.65□□□□□ -0.38
HDAC3-214ENST00000495485 DAXXQ9UER7 740 aaPredicted RBP12.65□□□□□ -0.38
HDAC3-214ENST00000495485 TBC1D2BQ9UPU7 963 aa12.65□□□□□ -0.38
HDAC3-214ENST00000495485 AFDNP55196 1824 aaKnown RBP12.65□□□□□ -0.39
HDAC3-214ENST00000495485 UTYO14607 1347 aa12.64□□□□□ -0.39
HDAC3-214ENST00000495485 MMP10P09238 476 aa12.64□□□□□ -0.39
HDAC3-214ENST00000495485 HSP90B1P14625 803 aaKnown RBP12.64□□□□□ -0.39
HDAC3-214ENST00000495485 ERICH6Q7L0X2 663 aa12.64□□□□□ -0.39
HDAC3-214ENST00000495485 SRGAP3O43295 1099 aa12.63□□□□□ -0.39
HDAC3-214ENST00000495485 TRIM28Q13263 835 aaKnown RBP12.63□□□□□ -0.39
HDAC3-214ENST00000495485 MTX1Q13505 466 aa12.63□□□□□ -0.39
HDAC3-214ENST00000495485 POLA2Q14181 598 aa12.63□□□□□ -0.39
HDAC3-214ENST00000495485 PPP1R42Q7Z4L9 355 aa12.63□□□□□ -0.39
HDAC3-214ENST00000495485 IPO9Q96P70 1041 aaKnown RBP12.63□□□□□ -0.39
HDAC3-214ENST00000495485 MYD88Q99836 296 aa12.63□□□□□ -0.39
HDAC3-214ENST00000495485 BCL2L12Q9HB09 334 aa12.63□□□□□ -0.39
HDAC3-214ENST00000495485 SRP68Q9UHB9 627 aaKnown RBP12.63□□□□□ -0.39
HDAC3-214ENST00000495485 ARFGEF2Q9Y6D5 1785 aa12.63□□□□□ -0.39
HDAC3-214ENST00000495485 GOLGB1Q14789 3259 aaKnown RBP12.62□□□□□ -0.39
HDAC3-214ENST00000495485 NEURL1BA8MQ27 555 aa12.62□□□□□ -0.39
HDAC3-214ENST00000495485 POLRMTO00411 1230 aaKnown RBP12.62□□□□□ -0.39
HDAC3-214ENST00000495485 SURF6O75683 361 aaKnown RBP12.62□□□□□ -0.39
HDAC3-214ENST00000495485 TGFB2P61812 414 aa12.62□□□□□ -0.39
HDAC3-214ENST00000495485 GCKRQ14397 625 aa12.62□□□□□ -0.39
HDAC3-214ENST00000495485 NFIXQ14938 502 aa12.62□□□□□ -0.39
HDAC3-214ENST00000495485 TPTE2Q6XPS3 522 aa12.62□□□□□ -0.39
HDAC3-214ENST00000495485 KIF1BPQ96EK5 621 aa12.62□□□□□ -0.39
HDAC3-214ENST00000495485 RIC1Q4ADV7 1423 aa12.62□□□□□ -0.39
HDAC3-214ENST00000495485 NBPF7P0C2Y1 421 aaPredicted RBP12.61□□□□□ -0.39
HDAC3-214ENST00000495485 OS9Q13438 667 aaPredicted RBP12.61□□□□□ -0.39
HDAC3-214ENST00000495485 TCIRG1Q13488 830 aa12.61□□□□□ -0.39
HDAC3-214ENST00000495485 MSL1Q68DK7 614 aa12.61□□□□□ -0.39
HDAC3-214ENST00000495485 TTLL7Q6ZT98 887 aa12.61□□□□□ -0.39
HDAC3-214ENST00000495485 PLEKHM2Q8IWE5 1019 aa12.61□□□□□ -0.39
HDAC3-214ENST00000495485 NIP7Q9Y221 180 aaKnown RBP eCLIP12.61□□□□□ -0.39
HDAC3-214ENST00000495485 C10orf71Q711Q0 1435 aa12.61□□□□□ -0.39
HDAC3-214ENST00000495485 PNMA6EA0A0J9YXQ4 647 aa12.6□□□□□ -0.39
HDAC3-214ENST00000495485 SERPINB2P05120 415 aa12.6□□□□□ -0.39
HDAC3-214ENST00000495485 PIP4K2AP48426 406 aaPredicted RBP12.6□□□□□ -0.39
HDAC3-214ENST00000495485 ST5P78524 1137 aa12.6□□□□□ -0.39
HDAC3-214ENST00000495485 CWF19L2Q2TBE0 894 aaKnown RBP12.6□□□□□ -0.39
HDAC3-214ENST00000495485 TBC1D9BQ66K14 1250 aa12.6□□□□□ -0.39
HDAC3-214ENST00000495485 ZNF34Q8IZ26 560 aa12.6□□□□□ -0.39
HDAC3-214ENST00000495485 CNBD1Q8NA66 436 aa12.6□□□□□ -0.39
HDAC3-214ENST00000495485 CCDC191Q8NCU4 936 aa12.6□□□□□ -0.39
HDAC3-214ENST00000495485 OSBPL3Q9H4L5 887 aa12.6□□□□□ -0.39
HDAC3-214ENST00000495485 AOX1Q06278 1338 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms