RNA–Protein interactions for RNA: ENST00000492275.5

TTC3-223, Transcript of tetratricopeptide repeat domain 3, human

TSL 3

Gene TTC3, Length 769 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-223	ENST00000492275	PI4KAP1	Q8N8J0	262 aa		33.06	■■■□□ 2.88
TTC3-223	ENST00000492275	PDZRN3	Q9UPQ7	1066 aa		33.06	■■■□□ 2.88
TTC3-223	ENST00000492275	BCS1L	Q9Y276	419 aa		33.06	■■■□□ 2.88
TTC3-223	ENST00000492275	MAP3K2	Q9Y2U5	619 aa		33.06	■■■□□ 2.88
TTC3-223	ENST00000492275	TRIM28	Q13263	835 aa	Known RBP	33.05	■■■□□ 2.88
TTC3-223	ENST00000492275	ZNF428	Q96B54	188 aa		33.05	■■■□□ 2.88
TTC3-223	ENST00000492275	METTL22	Q9BUU2	404 aa	Predicted RBP	33.05	■■■□□ 2.88
TTC3-223	ENST00000492275	ARFGEF1	Q9Y6D6	1849 aa		33.05	■■■□□ 2.88
TTC3-223	ENST00000492275	TNRC6C	Q9HCJ0	1690 aa	Known RBP	33.04	■■■□□ 2.88
TTC3-223	ENST00000492275	GRIN3B	O60391	1043 aa		33.04	■■■□□ 2.88
TTC3-223	ENST00000492275	MYD88	Q99836	296 aa		33.04	■■■□□ 2.88
TTC3-223	ENST00000492275	SRGN	P10124	158 aa		33.03	■■■□□ 2.88
TTC3-223	ENST00000492275	DALRD3	Q5D0E6	543 aa	Known RBP	33.03	■■■□□ 2.88
TTC3-223	ENST00000492275	SYNE4	Q8N205	404 aa		33.02	■■■□□ 2.88
TTC3-223	ENST00000492275	SLC10A5	Q5PT55	438 aa		33.01	■■■□□ 2.87
TTC3-223	ENST00000492275	ZNF622	Q969S3	477 aa	Known RBP eCLIP	33.01	■■■□□ 2.87	1e-6	■■■□□ 15.1
TTC3-223	ENST00000492275	TRMT112	Q9UI30	125 aa	Known RBP	33.01	■■■□□ 2.87
TTC3-223	ENST00000492275	CHD4	Q14839	1912 aa		33	■■■□□ 2.87
TTC3-223	ENST00000492275	FKBP5	Q13451	457 aa	Predicted RBP	33	■■■□□ 2.87
TTC3-223	ENST00000492275	RIC1	Q4ADV7	1423 aa		33	■■■□□ 2.87
TTC3-223	ENST00000492275	RNF123	Q5XPI4	1314 aa		33	■■■□□ 2.87
TTC3-223	ENST00000492275	GOLGB1	Q14789	3259 aa	Known RBP	32.99	■■■□□ 2.87
TTC3-223	ENST00000492275	MRPL50	Q8N5N7	158 aa	Known RBP	32.99	■■■□□ 2.87
TTC3-223	ENST00000492275	TTLL6	Q8N841	843 aa		32.99	■■■□□ 2.87
TTC3-223	ENST00000492275	SSH1	Q8WYL5	1049 aa		32.99	■■■□□ 2.87
TTC3-223	ENST00000492275	ZBED9	Q6R2W3	1325 aa		32.99	■■■□□ 2.87
TTC3-223	ENST00000492275	CACNA1S	Q13698	1873 aa		32.98	■■■□□ 2.87
TTC3-223	ENST00000492275	STYK1	Q6J9G0	422 aa		32.98	■■■□□ 2.87
TTC3-223	ENST00000492275	MASTL	Q96GX5	879 aa		32.98	■■■□□ 2.87
TTC3-223	ENST00000492275	SH3TC1	Q8TE82	1336 aa		32.98	■■■□□ 2.87
TTC3-223	ENST00000492275	IGKV5-2	P06315	115 aa		32.97	■■■□□ 2.87
TTC3-223	ENST00000492275	C3orf67	Q6ZVT6	689 aa		32.97	■■■□□ 2.87
TTC3-223	ENST00000492275	SLX4	Q8IY92	1834 aa		32.97	■■■□□ 2.87
TTC3-223	ENST00000492275	CT47B1	P0C2W7	299 aa	Predicted RBP	32.96	■■■□□ 2.87
TTC3-223	ENST00000492275	CRY2	Q49AN0	593 aa		32.96	■■■□□ 2.87
TTC3-223	ENST00000492275	CCDC191	Q8NCU4	936 aa		32.96	■■■□□ 2.87
TTC3-223	ENST00000492275	FAM89A	Q96GI7	184 aa		32.96	■■■□□ 2.87
TTC3-223	ENST00000492275	LAMB2	P55268	1798 aa		32.96	■■■□□ 2.87
TTC3-223	ENST00000492275	NPR1	P16066	1061 aa		32.95	■■■□□ 2.87
TTC3-223	ENST00000492275	DNAAF4	Q8WXU2	420 aa		32.95	■■■□□ 2.87
TTC3-223	ENST00000492275	DDX60	Q8IY21	1712 aa	Known RBP	32.94	■■■□□ 2.86
TTC3-223	ENST00000492275	HCLS1	P14317	486 aa	Predicted RBP	32.94	■■■□□ 2.86
TTC3-223	ENST00000492275	CNKSR1	Q969H4	720 aa		32.94	■■■□□ 2.86
TTC3-223	ENST00000492275	UTRN	P46939	3433 aa		32.94	■■■□□ 2.86
TTC3-223	ENST00000492275		F6X3S4	739 aa		32.93	■■■□□ 2.86
TTC3-223	ENST00000492275	ALDH1L2	Q3SY69	923 aa		32.93	■■■□□ 2.86
TTC3-223	ENST00000492275	NLRP3	Q96P20	1036 aa		32.93	■■■□□ 2.86
TTC3-223	ENST00000492275	BCL2L13	Q9BXK5	485 aa		32.93	■■■□□ 2.86
TTC3-223	ENST00000492275	CWC25	Q9NXE8	425 aa	Predicted RBP	32.93	■■■□□ 2.86
TTC3-223	ENST00000492275	NEXN	Q0ZGT2	675 aa		32.92	■■■□□ 2.86
TTC3-223	ENST00000492275	CWF19L2	Q2TBE0	894 aa	Known RBP	32.92	■■■□□ 2.86
TTC3-223	ENST00000492275	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	32.92	■■■□□ 2.86
TTC3-223	ENST00000492275	RTL5	Q5HYW3	569 aa	Predicted RBP	32.91	■■■□□ 2.86
TTC3-223	ENST00000492275	NEURL1B	A8MQ27	555 aa		32.9	■■■□□ 2.86
TTC3-223	ENST00000492275	HOXA10	P31260	410 aa	Predicted RBP	32.89	■■■□□ 2.86
TTC3-223	ENST00000492275	ARHGAP27	Q6ZUM4	889 aa		32.89	■■■□□ 2.86
TTC3-223	ENST00000492275	JARID2	Q92833	1246 aa	Predicted RBP	32.89	■■■□□ 2.86
TTC3-223	ENST00000492275	PCCA	P05165	728 aa	Predicted RBP	32.88	■■■□□ 2.85
TTC3-223	ENST00000492275	PRPF40B	Q6NWY9	871 aa	Known RBP	32.88	■■■□□ 2.85
TTC3-223	ENST00000492275	LINS1	Q8NG48	757 aa		32.87	■■■□□ 2.85
TTC3-223	ENST00000492275	RPGR	Q92834	1020 aa	Known RBP	32.87	■■■□□ 2.85
TTC3-223	ENST00000492275	SMC4	Q9NTJ3	1288 aa		32.87	■■■□□ 2.85
TTC3-223	ENST00000492275	IRS4	O14654	1257 aa	Predicted RBP	32.86	■■■□□ 2.85
TTC3-223	ENST00000492275	ZNF219	Q9P2Y4	722 aa	Predicted RBP	32.86	■■■□□ 2.85
TTC3-223	ENST00000492275	C21orf2	O43822	256 aa		32.85	■■■□□ 2.85
TTC3-223	ENST00000492275	ALDH1B1	P30837	517 aa		32.85	■■■□□ 2.85
TTC3-223	ENST00000492275	RARS	P54136	660 aa	Known RBP	32.85	■■■□□ 2.85
TTC3-223	ENST00000492275	BEND3	Q5T5X7	828 aa		32.85	■■■□□ 2.85
TTC3-223	ENST00000492275	C7orf43	Q8WVR3	580 aa		32.85	■■■□□ 2.85
TTC3-223	ENST00000492275	GCKR	Q14397	625 aa		32.84	■■■□□ 2.85
TTC3-223	ENST00000492275	RBM17	Q96I25	401 aa	Known RBP	32.84	■■■□□ 2.85
TTC3-223	ENST00000492275	CRAMP1	Q96RY5	1269 aa		32.84	■■■□□ 2.85
TTC3-223	ENST00000492275	TAF1	P21675	1872 aa		32.84	■■■□□ 2.85
TTC3-223	ENST00000492275	PTPRC	P08575	1304 aa		32.83	■■■□□ 2.85
TTC3-223	ENST00000492275		H7C1W4	665 aa		32.82	■■■□□ 2.84
TTC3-223	ENST00000492275	BRPF1	P55201	1214 aa	Predicted RBP	32.82	■■■□□ 2.84
TTC3-223	ENST00000492275	SBF1	O95248	1867 aa		32.82	■■■□□ 2.84
TTC3-223	ENST00000492275	SF3B3	Q15393	1217 aa	Known RBP	32.81	■■■□□ 2.84
TTC3-223	ENST00000492275	FER1L6	Q2WGJ9	1857 aa		32.81	■■■□□ 2.84
TTC3-223	ENST00000492275	CDHR2	Q9BYE9	1310 aa		32.8	■■■□□ 2.84
TTC3-223	ENST00000492275	YY1	P25490	414 aa		32.8	■■■□□ 2.84
TTC3-223	ENST00000492275	SLC4A10	Q6U841	1118 aa		32.8	■■■□□ 2.84
TTC3-223	ENST00000492275	NOB1	Q9ULX3	412 aa	Known RBP	32.78	■■■□□ 2.84
TTC3-223	ENST00000492275	CCDC88A	Q3V6T2	1871 aa		32.78	■■■□□ 2.84
TTC3-223	ENST00000492275	ABCC4	O15439	1325 aa		32.77	■■■□□ 2.84
TTC3-223	ENST00000492275	PDE8A	O60658	829 aa		32.77	■■■□□ 2.84
TTC3-223	ENST00000492275	CASP7	P55210	303 aa		32.77	■■■□□ 2.84
TTC3-223	ENST00000492275	OLFM4	Q6UX06	510 aa		32.77	■■■□□ 2.84
TTC3-223	ENST00000492275	UBE3B	Q7Z3V4	1068 aa		32.77	■■■□□ 2.84
TTC3-223	ENST00000492275	HSP90B1	P14625	803 aa	Known RBP	32.76	■■■□□ 2.83
TTC3-223	ENST00000492275	MYH3	P11055	1940 aa		32.76	■■■□□ 2.83
TTC3-223	ENST00000492275	NFKBIE	O00221	500 aa		32.75	■■■□□ 2.83
TTC3-223	ENST00000492275	RASSF7	Q02833	373 aa		32.75	■■■□□ 2.83
TTC3-223	ENST00000492275	DDX46	Q7L014	1031 aa	Known RBP	32.75	■■■□□ 2.83
TTC3-223	ENST00000492275	ALDH1L1	O75891	902 aa		32.74	■■■□□ 2.83
TTC3-223	ENST00000492275	SOGA3	Q5TF21	947 aa		32.74	■■■□□ 2.83
TTC3-223	ENST00000492275	SRCIN1	Q9C0H9	1055 aa		32.74	■■■□□ 2.83
TTC3-223	ENST00000492275	BCAR3	O75815	825 aa		32.73	■■■□□ 2.83
TTC3-223	ENST00000492275	PRELP	P51888	382 aa		32.73	■■■□□ 2.83
TTC3-223	ENST00000492275	SLC51A	Q86UW1	340 aa		32.73	■■■□□ 2.83

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms