RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 BNIP3LO60238 219 aa4.12□□□□□ -1.75
HMGB1-208ENST00000490788 FAM157BP0CG42 384 aa4.12□□□□□ -1.75
HMGB1-208ENST00000490788 MAPTP10636 758 aaKnown RBP4.12□□□□□ -1.75
HMGB1-208ENST00000490788 EPB42P16452 691 aa4.12□□□□□ -1.75
HMGB1-208ENST00000490788 ATP2B4P23634 1241 aa4.12□□□□□ -1.75
HMGB1-208ENST00000490788 SAMD5Q5TGI4 173 aa4.12□□□□□ -1.75
HMGB1-208ENST00000490788 CLP1Q92989 425 aaKnown RBP4.12□□□□□ -1.75
HMGB1-208ENST00000490788 HSH2DQ96JZ2 352 aa4.12□□□□□ -1.75
HMGB1-208ENST00000490788 SUSD3Q96L08 255 aa4.12□□□□□ -1.75
HMGB1-208ENST00000490788 MKNK1Q9BUB5 465 aa4.12□□□□□ -1.75
HMGB1-208ENST00000490788 FURINP09958 794 aa4.11□□□□□ -1.75
HMGB1-208ENST00000490788 FKBP5Q13451 457 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-208ENST00000490788 DGKZQ13574 1117 aa4.11□□□□□ -1.75
HMGB1-208ENST00000490788 ZMYM1Q5SVZ6 1142 aa4.11□□□□□ -1.75
HMGB1-208ENST00000490788 POTEAQ6S8J7 498 aa4.11□□□□□ -1.75
HMGB1-208ENST00000490788 BRD7Q9NPI1 651 aa4.11□□□□□ -1.75
HMGB1-208ENST00000490788 MARK1Q9P0L2 795 aa4.11□□□□□ -1.75
HMGB1-208ENST00000490788 CXXC1Q9P0U4 656 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-208ENST00000490788 GDF2Q9UK05 429 aaPredicted RBP4.11□□□□□ -1.75
HMGB1-208ENST00000490788 USTQ9Y2C2 406 aa4.11□□□□□ -1.75
HMGB1-208ENST00000490788 TGFBR3LH3BV60 316 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 THBS1P07996 1170 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 CD33P20138 364 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 TNP2Q05952 138 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 FAM69CQ0P6D2 419 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 C11orf91Q3C1V1 193 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 C16orf46Q6P387 395 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 BTLAQ7Z6A9 289 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 GOLGA6L1Q8N7Z2 621 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 COL26A1Q96A83 441 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 PNMA5Q96PV4 448 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 OXCT2Q9BYC2 517 aaPredicted RBP4.1□□□□□ -1.75
HMGB1-208ENST00000490788 KLK14Q9P0G3 267 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 MKL2Q9ULH7 1088 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 KCNH4Q9UQ05 1017 aa4.1□□□□□ -1.75
HMGB1-208ENST00000490788 PIK3R2O00459 728 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 AMPD1P23109 780 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 BRD2P25440 801 aaKnown RBP4.09□□□□□ -1.75
HMGB1-208ENST00000490788 CTBSQ01459 385 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 UBAP2LQ14157 1087 aaKnown RBP4.09□□□□□ -1.75
HMGB1-208ENST00000490788 NAA30Q147X3 362 aaPredicted RBP4.09□□□□□ -1.75
HMGB1-208ENST00000490788 OCLNQ16625 522 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 FAM182BQ5T319 152 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 IER5Q5VY09 327 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 ZNF280CQ8ND82 737 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 KLRG1Q96E93 195 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 IFT43Q96FT9 208 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 QTRT2Q9H974 415 aaKnown RBP4.09□□□□□ -1.75
HMGB1-208ENST00000490788 NDFIP2Q9NV92 336 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 FAM13BQ9NYF5 915 aa4.09□□□□□ -1.75
HMGB1-208ENST00000490788 KRBA1A5PL33 1030 aa4.08□□□□□ -1.76
HMGB1-208ENST00000490788 ARAFP10398 606 aa4.08□□□□□ -1.76
HMGB1-208ENST00000490788 ADH6P28332 368 aa4.08□□□□□ -1.76
HMGB1-208ENST00000490788 IDH3AP50213 366 aa4.08□□□□□ -1.76
HMGB1-208ENST00000490788 ARSDP51689 593 aa4.08□□□□□ -1.76
HMGB1-208ENST00000490788 TYRO3Q06418 890 aa4.08□□□□□ -1.76
HMGB1-208ENST00000490788 TTC16Q8NEE8 873 aa4.08□□□□□ -1.76
HMGB1-208ENST00000490788 MYO19Q96H55 970 aa4.08□□□□□ -1.76
HMGB1-208ENST00000490788 TMEM88BA6NKF7 163 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 NEURL1BA8MQ27 555 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 EFSO43281 561 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 MICAL2O94851 1124 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 ALAS2P22557 587 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 ARID4AP29374 1257 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-208ENST00000490788 TXKP42681 527 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 SNRPNP63162 240 aaKnown RBP4.07□□□□□ -1.76
HMGB1-208ENST00000490788 SPEM2Q0P670 501 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 SFSWAPQ12872 951 aaKnown RBP4.07□□□□□ -1.76
HMGB1-208ENST00000490788 FZD5Q13467 585 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 AAMPQ13685 434 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 COX20Q5RI15 118 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 TREML1Q86YW5 311 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 ABTB2Q8N961 1025 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 C7orf43Q8WVR3 580 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 RRAGCQ9HB90 399 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 AVENQ9NQS1 362 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-208ENST00000490788 GGA1Q9UJY5 639 aa4.07□□□□□ -1.76
HMGB1-208ENST00000490788 PCSK2P16519 638 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 COL8A1P27658 744 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 SSFA2P28290 1259 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 KCNQ4P56696 695 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 PCBP4P57723 403 aaKnown RBP4.06□□□□□ -1.76
HMGB1-208ENST00000490788 TBC1D8BQ0IIM8 1120 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 ZNF468Q5VIY5 522 aaPredicted RBP4.06□□□□□ -1.76
HMGB1-208ENST00000490788 SYT9Q86SS6 491 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 RGL4Q8IZJ4 473 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 CMTR1Q8N1G2 835 aaKnown RBP4.06□□□□□ -1.76
HMGB1-208ENST00000490788 RETREG2Q8NC44 543 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 EDARADDQ8WWZ3 215 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 PIK3R5Q8WYR1 880 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 BHMTQ93088 406 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 IGFLR1Q9H665 355 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 EFCC1Q9HA90 598 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 STRN4Q9NRL3 753 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 STIM2Q9P246 746 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 LRFN2Q9ULH4 789 aa4.06□□□□□ -1.76
HMGB1-208ENST00000490788 CARNS1A5YM72 827 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 SHISA8B8ZZ34 492 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 C2CD2LO14523 706 aa4.05□□□□□ -1.76
HMGB1-208ENST00000490788 ABL1P00519 1130 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms