RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, human

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRD9-208	ENST00000489816	STX6	O43752	255 aa		18.87	■□□□□ 0.61
BRD9-208	ENST00000489816	MTX1	Q13505	466 aa		18.87	■□□□□ 0.61
BRD9-208	ENST00000489816	LARP1	Q6PKG0	1096 aa	Known RBP	18.87	■□□□□ 0.61
BRD9-208	ENST00000489816	ME3	Q16798	604 aa		18.87	■□□□□ 0.61
BRD9-208	ENST00000489816	EVI5L	Q96CN4	794 aa		18.87	■□□□□ 0.61
BRD9-208	ENST00000489816	CCDC85A	Q96PX6	553 aa	Predicted RBP	18.87	■□□□□ 0.61
BRD9-208	ENST00000489816	CHMP4A	Q9BY43	222 aa		18.87	■□□□□ 0.61
BRD9-208	ENST00000489816		A0A087WZG4	1122 aa		18.86	■□□□□ 0.61
BRD9-208	ENST00000489816	DNM1	Q05193	864 aa	Known RBP	18.86	■□□□□ 0.61
BRD9-208	ENST00000489816	TFCP2	Q12800	502 aa		18.86	■□□□□ 0.61
BRD9-208	ENST00000489816	CYP46A1	Q9Y6A2	500 aa		18.86	■□□□□ 0.61
BRD9-208	ENST00000489816	CHD2	O14647	1828 aa	Known RBP	18.86	■□□□□ 0.61
BRD9-208	ENST00000489816	CREB3L3	Q68CJ9	461 aa		18.86	■□□□□ 0.61
BRD9-208	ENST00000489816	MSN	P26038	577 aa	Known RBP	18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	RPAP1	Q9BWH6	1393 aa	Predicted RBP	18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	ZKSCAN1	P17029	563 aa	Predicted RBP	18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	CABP4	P57796	275 aa		18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	ERC1	Q8IUD2	1116 aa		18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	LRRC2	Q9BYS8	371 aa		18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	CCDC171	Q6TFL3	1326 aa		18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	ZSCAN22	P10073	491 aa	Predicted RBP	18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	NEUROD6	Q96NK8	337 aa		18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	PPP1R9B	Q96SB3	815 aa		18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	TPCN1	Q9ULQ1	816 aa		18.85	■□□□□ 0.61
BRD9-208	ENST00000489816	FOSB	P53539	338 aa		18.84	■□□□□ 0.61
BRD9-208	ENST00000489816	DDX46	Q7L014	1031 aa	Known RBP	18.84	■□□□□ 0.61
BRD9-208	ENST00000489816	IFNL2	Q8IZJ0	200 aa		18.84	■□□□□ 0.61
BRD9-208	ENST00000489816	MBD3	O95983	291 aa		18.84	■□□□□ 0.61
BRD9-208	ENST00000489816	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	18.83	■□□□□ 0.61
BRD9-208	ENST00000489816	NECTIN1	Q15223	517 aa		18.83	■□□□□ 0.6
BRD9-208	ENST00000489816	DBNDD2	Q9BQY9	259 aa		18.83	■□□□□ 0.6
BRD9-208	ENST00000489816	DBNL	Q9UJU6	430 aa	Known RBP	18.83	■□□□□ 0.6
BRD9-208	ENST00000489816	ST3GAL1	Q11201	340 aa		18.83	■□□□□ 0.6
BRD9-208	ENST00000489816	METTL22	Q9BUU2	404 aa	Predicted RBP	18.83	■□□□□ 0.6
BRD9-208	ENST00000489816	ZBTB3	Q9H5J0	574 aa		18.83	■□□□□ 0.6
BRD9-208	ENST00000489816	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	18.82	■□□□□ 0.6
BRD9-208	ENST00000489816	RGPD5	Q99666	1765 aa		18.82	■□□□□ 0.6
BRD9-208	ENST00000489816	SLC27A2	O14975	620 aa		18.82	■□□□□ 0.6
BRD9-208	ENST00000489816	A1BG	P04217	495 aa		18.82	■□□□□ 0.6
BRD9-208	ENST00000489816	LMBR1L	Q6UX01	489 aa		18.82	■□□□□ 0.6
BRD9-208	ENST00000489816	ZSCAN30	Q86W11	494 aa		18.82	■□□□□ 0.6
BRD9-208	ENST00000489816	KDM6A	O15550	1401 aa	Predicted RBP	18.82	■□□□□ 0.6
BRD9-208	ENST00000489816	SNRPA1	P09661	255 aa	Known RBP	18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	GIMAP6	Q6P9H5	292 aa		18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	TTLL7	Q6ZT98	887 aa		18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	ZNF830	Q96NB3	372 aa	Predicted RBP	18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	TAOK2	Q9UL54	1235 aa		18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	HEG1	Q9ULI3	1381 aa		18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	PTMA	P06454	111 aa	Known RBP	18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	TIMM10	P62072	90 aa		18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	TSPY26P	Q9H489	355 aa		18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	F13A1	P00488	732 aa		18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	ZNF594	Q96JF6	807 aa	Predicted RBP	18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	TFIP11	Q9UBB9	837 aa	Known RBP	18.81	■□□□□ 0.6
BRD9-208	ENST00000489816	C1orf167	Q5SNV9	1468 aa		18.8	■□□□□ 0.6
BRD9-208	ENST00000489816	HCLS1	P14317	486 aa	Predicted RBP	18.8	■□□□□ 0.6
BRD9-208	ENST00000489816	TMEM94	Q12767	1356 aa		18.8	■□□□□ 0.6
BRD9-208	ENST00000489816	KAT6B	Q8WYB5	2073 aa		18.8	■□□□□ 0.6
BRD9-208	ENST00000489816	TUBGCP6	Q96RT7	1819 aa		18.8	■□□□□ 0.6
BRD9-208	ENST00000489816	MEGF6	O75095	1541 aa		18.8	■□□□□ 0.6
BRD9-208	ENST00000489816	PTPN12	Q05209	780 aa	Known RBP	18.8	■□□□□ 0.6
BRD9-208	ENST00000489816	LARP1B	Q659C4	914 aa	Known RBP	18.8	■□□□□ 0.6
BRD9-208	ENST00000489816	ZSWIM6	Q9HCJ5	1215 aa		18.8	■□□□□ 0.6
BRD9-208	ENST00000489816	STRN4	Q9NRL3	753 aa		18.8	■□□□□ 0.6
BRD9-208	ENST00000489816	NAP1L2	Q9ULW6	460 aa	Predicted RBP	18.79	■□□□□ 0.6
BRD9-208	ENST00000489816	MED1	Q15648	1581 aa	Predicted RBP	18.79	■□□□□ 0.6
BRD9-208	ENST00000489816	USP42	Q9H9J4	1324 aa	Known RBP	18.79	■□□□□ 0.6
BRD9-208	ENST00000489816	BLOC1S2	Q6QNY1	142 aa		18.79	■□□□□ 0.6
BRD9-208	ENST00000489816	TOM1L2	Q6ZVM7	507 aa		18.79	■□□□□ 0.6
BRD9-208	ENST00000489816	MAP4K1	Q92918	833 aa		18.79	■□□□□ 0.6
BRD9-208	ENST00000489816	DDX11	Q96FC9	970 aa		18.79	■□□□□ 0.6
BRD9-208	ENST00000489816	FMNL2	Q96PY5	1086 aa		18.79	■□□□□ 0.6
BRD9-208	ENST00000489816	USP25	Q9UHP3	1055 aa		18.79	■□□□□ 0.6
BRD9-208	ENST00000489816	HDAC5	Q9UQL6	1122 aa		18.79	■□□□□ 0.6
BRD9-208	ENST00000489816	KDM3B	Q7LBC6	1761 aa		18.78	■□□□□ 0.6
BRD9-208	ENST00000489816	MTMR6	Q9Y217	621 aa		18.78	■□□□□ 0.6
BRD9-208	ENST00000489816	CAMK4	Q16566	473 aa		18.78	■□□□□ 0.6
BRD9-208	ENST00000489816	VPS53	Q5VIR6	699 aa		18.78	■□□□□ 0.6
BRD9-208	ENST00000489816	CDC37L1	Q7L3B6	337 aa		18.77	■□□□□ 0.6
BRD9-208	ENST00000489816	TNNI3K	Q59H18	835 aa		18.77	■□□□□ 0.6
BRD9-208	ENST00000489816	FPGT-TNNI3K	V9GXZ4	949 aa		18.77	■□□□□ 0.6
BRD9-208	ENST00000489816	NBPF26	B4DH59	902 aa		18.77	■□□□□ 0.59
BRD9-208	ENST00000489816	NBPF14	Q5TI25	921 aa		18.77	■□□□□ 0.59
BRD9-208	ENST00000489816	NBPF10	Q6P3W6	841 aa	Known RBP	18.77	■□□□□ 0.59
BRD9-208	ENST00000489816	NBPF15	Q8N660	670 aa		18.77	■□□□□ 0.59
BRD9-208	ENST00000489816		A0A0G2JLW4	131 aa		18.76	■□□□□ 0.59
BRD9-208	ENST00000489816	SYAP1	Q96A49	352 aa	Predicted RBP	18.76	■□□□□ 0.59
BRD9-208	ENST00000489816	DCAF5	Q96JK2	942 aa		18.76	■□□□□ 0.59
BRD9-208	ENST00000489816	PRDM11	Q9NQV5	511 aa		18.76	■□□□□ 0.59
BRD9-208	ENST00000489816	JAK2	O60674	1132 aa		18.76	■□□□□ 0.59
BRD9-208	ENST00000489816	FGD1	P98174	961 aa		18.76	■□□□□ 0.59
BRD9-208	ENST00000489816	GOLIM4	O00461	696 aa		18.75	■□□□□ 0.59
BRD9-208	ENST00000489816	CEBPZ	Q03701	1054 aa	Known RBP	18.75	■□□□□ 0.59
BRD9-208	ENST00000489816	CHST3	Q7LGC8	479 aa		18.75	■□□□□ 0.59
BRD9-208	ENST00000489816	HSP90B1	P14625	803 aa	Known RBP	18.75	■□□□□ 0.59
BRD9-208	ENST00000489816	LRP10	Q7Z4F1	713 aa		18.75	■□□□□ 0.59
BRD9-208	ENST00000489816	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	18.75	■□□□□ 0.59
BRD9-208	ENST00000489816	SNRK	Q9NRH2	765 aa		18.75	■□□□□ 0.59
BRD9-208	ENST00000489816	R3HCC1	Q9Y3T6	440 aa	Known RBP	18.75	■□□□□ 0.59
BRD9-208	ENST00000489816	UTY	O14607	1347 aa		18.74	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms