RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 TBC1D9Q6ZT07 1266 aa17.3■□□□□ 0.36
CLK3-204ENST00000483723 UPF2Q9HAU5 1272 aaKnown RBP17.3■□□□□ 0.36
CLK3-204ENST00000483723 IL1RAPL2Q9NP60 686 aa17.3■□□□□ 0.36
CLK3-204ENST00000483723 USP42Q9H9J4 1324 aaKnown RBP17.3■□□□□ 0.36
CLK3-204ENST00000483723 SASH1O94885 1247 aa17.3■□□□□ 0.36
CLK3-204ENST00000483723 CRKLP46109 303 aaKnown RBP17.3■□□□□ 0.36
CLK3-204ENST00000483723 HLFQ16534 295 aa17.3■□□□□ 0.36
CLK3-204ENST00000483723 PCCAP05165 728 aaPredicted RBP17.29■□□□□ 0.36
CLK3-204ENST00000483723 G3BP1Q13283 466 aaKnown RBP eCLIP17.29■□□□□ 0.36
CLK3-204ENST00000483723 DDRGK1Q96HY6 314 aa17.29■□□□□ 0.36
CLK3-204ENST00000483723 PLA2G12BQ9BX93 195 aa17.29■□□□□ 0.36
CLK3-204ENST00000483723 ZNF330Q9Y3S2 320 aaPredicted RBP17.29■□□□□ 0.36
CLK3-204ENST00000483723 SBF2Q86WG5 1849 aa17.28■□□□□ 0.36
CLK3-204ENST00000483723 A0A0G2JS52 829 aa17.28■□□□□ 0.36
CLK3-204ENST00000483723 PTPN12Q05209 780 aaKnown RBP17.28■□□□□ 0.36
CLK3-204ENST00000483723 DZIP3Q86Y13 1208 aaKnown RBP17.28■□□□□ 0.36
CLK3-204ENST00000483723 BTAF1O14981 1849 aa17.28■□□□□ 0.36
CLK3-204ENST00000483723 EIF5BO60841 1220 aaKnown RBP17.27■□□□□ 0.36
CLK3-204ENST00000483723 MYT1Q01538 1121 aa17.27■□□□□ 0.36
CLK3-204ENST00000483723 LMBR1LQ6UX01 489 aa17.27■□□□□ 0.36
CLK3-204ENST00000483723 QTRT2Q9H974 415 aaKnown RBP17.27■□□□□ 0.36
CLK3-204ENST00000483723 OS9Q13438 667 aaPredicted RBP17.27■□□□□ 0.35
CLK3-204ENST00000483723 PTF1AQ7RTS3 328 aa17.27■□□□□ 0.35
CLK3-204ENST00000483723 NLRP10Q86W26 655 aa17.27■□□□□ 0.35
CLK3-204ENST00000483723 NUTM1Q86Y26 1132 aa17.27■□□□□ 0.35
CLK3-204ENST00000483723 SEPT12Q8IYM1 358 aa17.27■□□□□ 0.35
CLK3-204ENST00000483723 ZNF34Q8IZ26 560 aa17.27■□□□□ 0.35
CLK3-204ENST00000483723 CLASRPQ8N2M8 674 aaKnown RBP17.27■□□□□ 0.35
CLK3-204ENST00000483723 ZBTB38Q8NAP3 1195 aaPredicted RBP17.27■□□□□ 0.35
CLK3-204ENST00000483723 BCL11AQ9H165 835 aa17.27■□□□□ 0.35
CLK3-204ENST00000483723 CDHR2Q9BYE9 1310 aa17.26■□□□□ 0.35
CLK3-204ENST00000483723 TTC41PQ6P2S7 1318 aa17.25■□□□□ 0.35
CLK3-204ENST00000483723 MFAP1P55081 439 aaKnown RBP17.25■□□□□ 0.35
CLK3-204ENST00000483723 PI4K2BQ8TCG2 481 aa17.25■□□□□ 0.35
CLK3-204ENST00000483723 C22orf23Q9BZE7 217 aa17.25■□□□□ 0.35
CLK3-204ENST00000483723 TBC1D2BQ9UPU7 963 aa17.25■□□□□ 0.35
CLK3-204ENST00000483723 ZNF772Q68DY9 489 aaPredicted RBP17.24■□□□□ 0.35
CLK3-204ENST00000483723 POTEAQ6S8J7 498 aa17.24■□□□□ 0.35
CLK3-204ENST00000483723 KLHDC4Q8TBB5 520 aa17.24■□□□□ 0.35
CLK3-204ENST00000483723 CNTNAP4Q9C0A0 1308 aa17.24■□□□□ 0.35
CLK3-204ENST00000483723 CAMTA2O94983 1202 aa17.24■□□□□ 0.35
CLK3-204ENST00000483723 CSF1RP07333 972 aa17.24■□□□□ 0.35
CLK3-204ENST00000483723 RBM25P49756 843 aaKnown RBP17.24■□□□□ 0.35
CLK3-204ENST00000483723 RC3H1Q5TC82 1133 aaKnown RBP17.24■□□□□ 0.35
CLK3-204ENST00000483723 TSHZ3Q63HK5 1081 aa17.24■□□□□ 0.35
CLK3-204ENST00000483723 LINC00116Q8NCU8 138 aa17.24■□□□□ 0.35
CLK3-204ENST00000483723 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.24■□□□□ 0.35
CLK3-204ENST00000483723 LY75O60449 1722 aa17.24■□□□□ 0.35
CLK3-204ENST00000483723 EAF2Q96CJ1 260 aaPredicted RBP17.23■□□□□ 0.35
CLK3-204ENST00000483723 ARXQ96QS3 562 aa17.23■□□□□ 0.35
CLK3-204ENST00000483723 RGL2O15211 777 aa17.22■□□□□ 0.35
CLK3-204ENST00000483723 RTL5Q5HYW3 569 aaPredicted RBP17.22■□□□□ 0.35
CLK3-204ENST00000483723 FAM89AQ96GI7 184 aa17.22■□□□□ 0.35
CLK3-204ENST00000483723 FAM182BQ5T319 152 aa17.21■□□□□ 0.35
CLK3-204ENST00000483723 SIL1Q9H173 461 aa17.21■□□□□ 0.35
CLK3-204ENST00000483723 BCORQ6W2J9 1755 aa17.21■□□□□ 0.35
CLK3-204ENST00000483723 IFIT2P09913 472 aaKnown RBP17.21■□□□□ 0.35
CLK3-204ENST00000483723 GPTP24298 496 aa17.21■□□□□ 0.35
CLK3-204ENST00000483723 ECHDC1Q9NTX5 307 aa17.21■□□□□ 0.35
CLK3-204ENST00000483723 FBXO3Q9UK99 471 aa17.21■□□□□ 0.35
CLK3-204ENST00000483723 UBN2Q6ZU65 1347 aa17.2■□□□□ 0.34
CLK3-204ENST00000483723 GLRX3O76003 335 aaKnown RBP17.2■□□□□ 0.34
CLK3-204ENST00000483723 CASC1Q6TDU7 716 aa17.2■□□□□ 0.34
CLK3-204ENST00000483723 ATG9AQ7Z3C6 839 aa17.2■□□□□ 0.34
CLK3-204ENST00000483723 AACSQ86V21 672 aa17.2■□□□□ 0.34
CLK3-204ENST00000483723 ERC2O15083 957 aa17.19■□□□□ 0.34
CLK3-204ENST00000483723 CIAO1O76071 339 aa17.19■□□□□ 0.34
CLK3-204ENST00000483723 CLEC4GQ6UXB4 293 aa17.19■□□□□ 0.34
CLK3-204ENST00000483723 BCL11BQ9C0K0 894 aaPredicted RBP17.19■□□□□ 0.34
CLK3-204ENST00000483723 TAF1LQ8IZX4 1826 aa17.19■□□□□ 0.34
CLK3-204ENST00000483723 SYNE4Q8N205 404 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 GPATCH3Q96I76 525 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 AK7Q96M32 723 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 GPR108Q9NPR9 543 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 MYH3P11055 1940 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 BRWD3Q6RI45 1802 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 AK9Q5TCS8 1911 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 EYA2O00167 538 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 RPS6KA4O75676 772 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 CHMLP26374 656 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 IL15P40933 162 aaPredicted RBP17.18■□□□□ 0.34
CLK3-204ENST00000483723 TFCP2Q12800 502 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 PARP10Q53GL7 1025 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 TRMT112Q9UI30 125 aaKnown RBP17.18■□□□□ 0.34
CLK3-204ENST00000483723 CHMP3Q9Y3E7 222 aa17.18■□□□□ 0.34
CLK3-204ENST00000483723 TRIM6-TRIM34B2RNG4 842 aa17.17■□□□□ 0.34
CLK3-204ENST00000483723 IRS4O14654 1257 aaPredicted RBP17.17■□□□□ 0.34
CLK3-204ENST00000483723 TNNI3KQ59H18 835 aa17.17■□□□□ 0.34
CLK3-204ENST00000483723 SUSD4Q5VX71 490 aa17.17■□□□□ 0.34
CLK3-204ENST00000483723 TTLL11Q8NHH1 800 aa17.17■□□□□ 0.34
CLK3-204ENST00000483723 USP26Q9BXU7 913 aa17.17■□□□□ 0.34
CLK3-204ENST00000483723 CCDC8Q9H0W5 538 aaPredicted RBP17.17■□□□□ 0.34
CLK3-204ENST00000483723 FPGT-TNNI3KV9GXZ4 949 aa17.17■□□□□ 0.34
CLK3-204ENST00000483723 PDE8AO60658 829 aa17.16■□□□□ 0.34
CLK3-204ENST00000483723 KCNQ4P56696 695 aa17.16■□□□□ 0.34
CLK3-204ENST00000483723 FAM196AQ6ZSG2 479 aa17.16■□□□□ 0.34
CLK3-204ENST00000483723 RILPL2Q969X0 211 aa17.16■□□□□ 0.34
CLK3-204ENST00000483723 CCDC57Q2TAC2 916 aa17.16■□□□□ 0.34
CLK3-204ENST00000483723 KIF2CQ99661 725 aa17.16■□□□□ 0.34
CLK3-204ENST00000483723 CCNL1Q9UK58 526 aaPredicted RBP17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms