RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 CHD4Q14839 1912 aa15.72■□□□□ 0.11
PTPRF-213ENST00000481019 E9PSI1 815 aa15.72■□□□□ 0.11
PTPRF-213ENST00000481019 PARP10Q53GL7 1025 aa15.72■□□□□ 0.11
PTPRF-213ENST00000481019 RIC3Q7Z5B4 369 aa15.72■□□□□ 0.11
PTPRF-213ENST00000481019 UTP14AQ9BVJ6 771 aaKnown RBP15.72■□□□□ 0.11
PTPRF-213ENST00000481019 YY1P25490 414 aa15.71■□□□□ 0.11
PTPRF-213ENST00000481019 GTF2E1P29083 439 aaPredicted RBP15.71■□□□□ 0.11
PTPRF-213ENST00000481019 HSP90AB3PQ58FF7 597 aa15.71■□□□□ 0.11
PTPRF-213ENST00000481019 TTLL6Q8N841 843 aa15.71■□□□□ 0.11
PTPRF-213ENST00000481019 MYD88Q99836 296 aa15.71■□□□□ 0.11
PTPRF-213ENST00000481019 STK31Q9BXU1 1019 aa15.71■□□□□ 0.11
PTPRF-213ENST00000481019 NYXQ9GZU5 481 aa15.71■□□□□ 0.11
PTPRF-213ENST00000481019 ZNF219Q9P2Y4 722 aaPredicted RBP15.71■□□□□ 0.11
PTPRF-213ENST00000481019 MAP3K2Q9Y2U5 619 aa15.71■□□□□ 0.11
PTPRF-213ENST00000481019 LAMB2P55268 1798 aa15.71■□□□□ 0.11
PTPRF-213ENST00000481019 PI4KAP2A4QPH2 592 aa15.7■□□□□ 0.1
PTPRF-213ENST00000481019 HCLS1P14317 486 aaPredicted RBP15.7■□□□□ 0.1
PTPRF-213ENST00000481019 PRELPP51888 382 aa15.7■□□□□ 0.1
PTPRF-213ENST00000481019 FLIIQ13045 1269 aa15.7■□□□□ 0.1
PTPRF-213ENST00000481019 ARHGAP27Q6ZUM4 889 aa15.7■□□□□ 0.1
PTPRF-213ENST00000481019 PPP1R42Q7Z4L9 355 aa15.7■□□□□ 0.1
PTPRF-213ENST00000481019 PI4KAP1Q8N8J0 262 aa15.7■□□□□ 0.1
PTPRF-213ENST00000481019 JARID2Q92833 1246 aaPredicted RBP15.7■□□□□ 0.1
PTPRF-213ENST00000481019 DDX60Q8IY21 1712 aaKnown RBP15.7■□□□□ 0.1
PTPRF-213ENST00000481019 RIC1Q4ADV7 1423 aa15.69■□□□□ 0.1
PTPRF-213ENST00000481019 IGKV5-2P06315 115 aa15.69■□□□□ 0.1
PTPRF-213ENST00000481019 CRY2Q49AN0 593 aa15.69■□□□□ 0.1
PTPRF-213ENST00000481019 SLC10A5Q5PT55 438 aa15.69■□□□□ 0.1
PTPRF-213ENST00000481019 STYK1Q6J9G0 422 aa15.69■□□□□ 0.1
PTPRF-213ENST00000481019 OLFM4Q6UX06 510 aa15.69■□□□□ 0.1
PTPRF-213ENST00000481019 KSR2Q6VAB6 950 aa15.69■□□□□ 0.1
PTPRF-213ENST00000481019 FAM89AQ96GI7 184 aa15.69■□□□□ 0.1
PTPRF-213ENST00000481019 MASTLQ96GX5 879 aa15.69■□□□□ 0.1
PTPRF-213ENST00000481019 YTHDC1Q96MU7 727 aaKnown RBP15.69■□□□□ 0.1
PTPRF-213ENST00000481019 METTL22Q9BUU2 404 aaPredicted RBP15.69■□□□□ 0.1
PTPRF-213ENST00000481019 TRMT112Q9UI30 125 aaKnown RBP15.69■□□□□ 0.1
PTPRF-213ENST00000481019 COL4A1P02462 1669 aa15.69■□□□□ 0.1
PTPRF-213ENST00000481019 C21orf2O43822 256 aa15.68■□□□□ 0.1
PTPRF-213ENST00000481019 HNRNPUQ00839 825 aaKnown RBP eCLIP15.68■□□□□ 0.1
PTPRF-213ENST00000481019 RASSF7Q02833 373 aa15.68■□□□□ 0.1
PTPRF-213ENST00000481019 TRIM28Q13263 835 aaKnown RBP15.68■□□□□ 0.1
PTPRF-213ENST00000481019 RTL5Q5HYW3 569 aaPredicted RBP15.68■□□□□ 0.1
PTPRF-213ENST00000481019 PRPF40BQ6NWY9 871 aaKnown RBP15.68■□□□□ 0.1
PTPRF-213ENST00000481019 NPR1P16066 1061 aa15.67■□□□□ 0.1
PTPRF-213ENST00000481019 MRPL50Q8N5N7 158 aaKnown RBP15.67■□□□□ 0.1
PTPRF-213ENST00000481019 C7orf43Q8WVR3 580 aa15.67■□□□□ 0.1
PTPRF-213ENST00000481019 CHMP4AQ9BY43 222 aa15.67■□□□□ 0.1
PTPRF-213ENST00000481019 PDZRN3Q9UPQ7 1066 aa15.67■□□□□ 0.1
PTPRF-213ENST00000481019 CACNA1FO60840 1977 aa15.67■□□□□ 0.1
PTPRF-213ENST00000481019 TAF1P21675 1872 aa15.66■□□□□ 0.1
PTPRF-213ENST00000481019 F6X3S4 739 aa15.66■□□□□ 0.1
PTPRF-213ENST00000481019 NFKBIEO00221 500 aa15.66■□□□□ 0.1
PTPRF-213ENST00000481019 DDX58O95786 925 aaKnown RBP15.66■□□□□ 0.1
PTPRF-213ENST00000481019 CWF19L2Q2TBE0 894 aaKnown RBP15.66■□□□□ 0.1
PTPRF-213ENST00000481019 SH3TC1Q8TE82 1336 aa15.66■□□□□ 0.1
PTPRF-213ENST00000481019 FKBP5Q13451 457 aaPredicted RBP15.65■□□□□ 0.1
PTPRF-213ENST00000481019 SSH1Q8WYL5 1049 aa15.65■□□□□ 0.1
PTPRF-213ENST00000481019 CNKSR1Q969H4 720 aa15.65■□□□□ 0.1
PTPRF-213ENST00000481019 BCL2L13Q9BXK5 485 aa15.65■□□□□ 0.1
PTPRF-213ENST00000481019 SBF1O95248 1867 aa15.65■□□□□ 0.1
PTPRF-213ENST00000481019 RNF123Q5XPI4 1314 aa15.65■□□□□ 0.1
PTPRF-213ENST00000481019 NEURL1BA8MQ27 555 aa15.64■□□□□ 0.09
PTPRF-213ENST00000481019 HOXA10P31260 410 aaPredicted RBP15.64■□□□□ 0.09
PTPRF-213ENST00000481019 CCDC191Q8NCU4 936 aa15.64■□□□□ 0.09
PTPRF-213ENST00000481019 FER1L6Q2WGJ9 1857 aa15.63■□□□□ 0.09
PTPRF-213ENST00000481019 DNAAF4Q8WXU2 420 aa15.63■□□□□ 0.09
PTPRF-213ENST00000481019 NLRP3Q96P20 1036 aa15.63■□□□□ 0.09
PTPRF-213ENST00000481019 CWC25Q9NXE8 425 aaPredicted RBP15.63■□□□□ 0.09
PTPRF-213ENST00000481019 SNED1Q8TER0 1413 aa15.62■□□□□ 0.09
PTPRF-213ENST00000481019 IRS4O14654 1257 aaPredicted RBP15.62■□□□□ 0.09
PTPRF-213ENST00000481019 PCCAP05165 728 aaPredicted RBP15.62■□□□□ 0.09
PTPRF-213ENST00000481019 C9orf131Q5VYM1 1079 aa15.62■□□□□ 0.09
PTPRF-213ENST00000481019 ZBTB38Q8NAP3 1195 aaPredicted RBP15.62■□□□□ 0.09
PTPRF-213ENST00000481019 ZNF784Q8NCA9 323 aaPredicted RBP15.62■□□□□ 0.09
PTPRF-213ENST00000481019 RPGRQ92834 1020 aaKnown RBP15.62■□□□□ 0.09
PTPRF-213ENST00000481019 ABCC4O15439 1325 aa15.62■□□□□ 0.09
PTPRF-213ENST00000481019 BEND3Q5T5X7 828 aa15.61■□□□□ 0.09
PTPRF-213ENST00000481019 RBM17Q96I25 401 aaKnown RBP15.61■□□□□ 0.09
PTPRF-213ENST00000481019 CRAMP1Q96RY5 1269 aa15.61■□□□□ 0.09
PTPRF-213ENST00000481019 CCDC88AQ3V6T2 1871 aa15.61■□□□□ 0.09
PTPRF-213ENST00000481019 H7C1W4 665 aa15.59■□□□□ 0.09
PTPRF-213ENST00000481019 ALDH1B1P30837 517 aa15.59■□□□□ 0.09
PTPRF-213ENST00000481019 CASP7P55210 303 aa15.59■□□□□ 0.09
PTPRF-213ENST00000481019 GCKRQ14397 625 aa15.59■□□□□ 0.09
PTPRF-213ENST00000481019 SF3B3Q15393 1217 aaKnown RBP15.59■□□□□ 0.09
PTPRF-213ENST00000481019 RNF181Q9P0P0 153 aa15.59■□□□□ 0.09
PTPRF-213ENST00000481019 PPEF1O14829 653 aaPredicted RBP15.58■□□□□ 0.08
PTPRF-213ENST00000481019 NEXNQ0ZGT2 675 aa15.58■□□□□ 0.08
PTPRF-213ENST00000481019 UBE3BQ7Z3V4 1068 aa15.58■□□□□ 0.08
PTPRF-213ENST00000481019 LINS1Q8NG48 757 aa15.58■□□□□ 0.08
PTPRF-213ENST00000481019 CELF1Q92879 486 aaKnown RBP15.58■□□□□ 0.08
PTPRF-213ENST00000481019 CCDC85AQ96PX6 553 aaPredicted RBP15.58■□□□□ 0.08
PTPRF-213ENST00000481019 SEC31BQ9NQW1 1179 aa15.58■□□□□ 0.08
PTPRF-213ENST00000481019 ZBED9Q6R2W3 1325 aa15.58■□□□□ 0.08
PTPRF-213ENST00000481019 RARSP54136 660 aaKnown RBP15.57■□□□□ 0.08
PTPRF-213ENST00000481019 ALDH1L2Q3SY69 923 aa15.57■□□□□ 0.08
PTPRF-213ENST00000481019 CCDC93Q567U6 631 aa15.57■□□□□ 0.08
PTPRF-213ENST00000481019 ZNF526Q8TF50 670 aaPredicted RBP15.57■□□□□ 0.08
PTPRF-213ENST00000481019 SMC4Q9NTJ3 1288 aa15.57■□□□□ 0.08
PTPRF-213ENST00000481019 CDHR2Q9BYE9 1310 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms