RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 ATP13A2Q9NQ11 1180 aa9.96□□□□□ -0.82
VPS50-212ENST00000476413 AAASQ9NRG9 546 aa9.96□□□□□ -0.82
VPS50-212ENST00000476413 RNF19AQ9NV58 838 aa9.96□□□□□ -0.82
VPS50-212ENST00000476413 DACH1Q9UI36 760 aa9.96□□□□□ -0.82
VPS50-212ENST00000476413 LDHBP07195 334 aaKnown RBP9.95□□□□□ -0.82
VPS50-212ENST00000476413 THBS1P07996 1170 aa9.95□□□□□ -0.82
VPS50-212ENST00000476413 ARSDP51689 593 aa9.95□□□□□ -0.82
VPS50-212ENST00000476413 CFHR5Q9BXR6 569 aa9.95□□□□□ -0.82
VPS50-212ENST00000476413 FAM13BQ9NYF5 915 aa9.95□□□□□ -0.82
VPS50-212ENST00000476413 F11P03951 625 aa9.94□□□□□ -0.82
VPS50-212ENST00000476413 ORC1Q13415 861 aa9.94□□□□□ -0.82
VPS50-212ENST00000476413 MRPL58Q14197 206 aaKnown RBP9.94□□□□□ -0.82
VPS50-212ENST00000476413 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.94□□□□□ -0.82
VPS50-212ENST00000476413 PIK3R5Q8WYR1 880 aa9.94□□□□□ -0.82
VPS50-212ENST00000476413 RTCBQ9Y3I0 505 aaKnown RBP9.94□□□□□ -0.82
VPS50-212ENST00000476413 SOBPA7XYQ1 873 aa9.93□□□□□ -0.82
VPS50-212ENST00000476413 PRPF40AO75400 957 aaKnown RBP9.93□□□□□ -0.82
VPS50-212ENST00000476413 RECKO95980 971 aa9.93□□□□□ -0.82
VPS50-212ENST00000476413 C8orf34Q49A92 452 aa9.93□□□□□ -0.82
VPS50-212ENST00000476413 PNMA6FA0A0J9YX94 578 aa9.92□□□□□ -0.82
VPS50-212ENST00000476413 RPLP1P05386 114 aaKnown RBP9.92□□□□□ -0.82
VPS50-212ENST00000476413 PCSK2P16519 638 aa9.92□□□□□ -0.82
VPS50-212ENST00000476413 SAMD5Q5TGI4 173 aa9.92□□□□□ -0.82
VPS50-212ENST00000476413 XKR5Q6UX68 686 aa9.92□□□□□ -0.82
VPS50-212ENST00000476413 UBAP2LQ14157 1087 aaKnown RBP9.91□□□□□ -0.82
VPS50-212ENST00000476413 LDLRAD1Q5T700 205 aa9.91□□□□□ -0.82
VPS50-212ENST00000476413 NLRP8Q86W28 1048 aa9.91□□□□□ -0.82
VPS50-212ENST00000476413 CSRNP1Q96S65 589 aa9.91□□□□□ -0.82
VPS50-212ENST00000476413 DUSP9Q99956 384 aaKnown RBP9.91□□□□□ -0.82
VPS50-212ENST00000476413 NEUROD4Q9HD90 331 aa9.91□□□□□ -0.82
VPS50-212ENST00000476413 PARP2Q9UGN5 583 aa9.91□□□□□ -0.82
VPS50-212ENST00000476413 CMTR1Q8N1G2 835 aaKnown RBP9.9□□□□□ -0.82
VPS50-212ENST00000476413 FAM161BQ96MY7 647 aa9.9□□□□□ -0.82
VPS50-212ENST00000476413 GAS2L1Q99501 681 aaPredicted RBP9.9□□□□□ -0.82
VPS50-212ENST00000476413 ZCCHC2Q9C0B9 1178 aaKnown RBP9.9□□□□□ -0.82
VPS50-212ENST00000476413 FOXD3Q9UJU5 478 aaPredicted RBP9.9□□□□□ -0.82
VPS50-212ENST00000476413 HCN2Q9UL51 889 aa9.9□□□□□ -0.82
VPS50-212ENST00000476413 SLC35F4A4IF30 521 aa9.89□□□□□ -0.83
VPS50-212ENST00000476413 EIF1AYO14602 144 aaKnown RBP9.89□□□□□ -0.83
VPS50-212ENST00000476413 MAN1A2O60476 641 aa9.89□□□□□ -0.83
VPS50-212ENST00000476413 TNFRSF21O75509 655 aa9.89□□□□□ -0.83
VPS50-212ENST00000476413 CEP63Q96MT8 703 aa9.89□□□□□ -0.83
VPS50-212ENST00000476413 EGFRP00533 1210 aa9.88□□□□□ -0.83
VPS50-212ENST00000476413 DAB2P98082 770 aa9.88□□□□□ -0.83
VPS50-212ENST00000476413 PTSQ03393 145 aa9.88□□□□□ -0.83
VPS50-212ENST00000476413 PDE12Q6L8Q7 609 aaKnown RBP9.88□□□□□ -0.83
VPS50-212ENST00000476413 TMC4Q7Z404 712 aa9.88□□□□□ -0.83
VPS50-212ENST00000476413 BRD7Q9NPI1 651 aa9.88□□□□□ -0.83
VPS50-212ENST00000476413 TMEM63CQ9P1W3 806 aa9.88□□□□□ -0.83
VPS50-212ENST00000476413 UBAP1LF5GYI3 381 aa9.87□□□□□ -0.83
VPS50-212ENST00000476413 EFSO43281 561 aa9.87□□□□□ -0.83
VPS50-212ENST00000476413 KCNQ4P56696 695 aa9.87□□□□□ -0.83
VPS50-212ENST00000476413 LAPTM4AQ15012 233 aa9.87□□□□□ -0.83
VPS50-212ENST00000476413 USPL1Q5W0Q7 1092 aa9.87□□□□□ -0.83
VPS50-212ENST00000476413 ALG1LQ6GMV1 187 aa9.87□□□□□ -0.83
VPS50-212ENST00000476413 PGBD3Q8N328 593 aa9.87□□□□□ -0.83
VPS50-212ENST00000476413 DNAJC25Q9H1X3 360 aa9.87□□□□□ -0.83
VPS50-212ENST00000476413 GJA3Q9Y6H8 435 aa9.87□□□□□ -0.83
VPS50-212ENST00000476413 FAM157BP0CG42 384 aa9.86□□□□□ -0.83
VPS50-212ENST00000476413 FGD1P98174 961 aa9.86□□□□□ -0.83
VPS50-212ENST00000476413 ATP2B2Q01814 1243 aa9.86□□□□□ -0.83
VPS50-212ENST00000476413 LBRQ14739 615 aaKnown RBP9.86□□□□□ -0.83
VPS50-212ENST00000476413 ZNF438Q7Z4V0 828 aa9.86□□□□□ -0.83
VPS50-212ENST00000476413 BACH2Q9BYV9 841 aa9.86□□□□□ -0.83
VPS50-212ENST00000476413 CHRDQ9H2X0 955 aa9.86□□□□□ -0.83
VPS50-212ENST00000476413 ELP3Q9H9T3 547 aa9.86□□□□□ -0.83
VPS50-212ENST00000476413 CUEDC1Q9NWM3 386 aaPredicted RBP9.86□□□□□ -0.83
VPS50-212ENST00000476413 FNDC3AQ9Y2H6 1198 aaKnown RBP9.86□□□□□ -0.83
VPS50-212ENST00000476413 CPNE3O75131 537 aaKnown RBP9.85□□□□□ -0.83
VPS50-212ENST00000476413 XYLBO75191 536 aa9.85□□□□□ -0.83
VPS50-212ENST00000476413 TCF3P15923 654 aa9.85□□□□□ -0.83
VPS50-212ENST00000476413 EPB42P16452 691 aa9.85□□□□□ -0.83
VPS50-212ENST00000476413 EFHC2Q5JST6 749 aa9.85□□□□□ -0.83
VPS50-212ENST00000476413 SNX29Q8TEQ0 813 aa9.85□□□□□ -0.83
VPS50-212ENST00000476413 FBF1Q8TES7 1133 aa9.85□□□□□ -0.83
VPS50-212ENST00000476413 C11orf16Q9NQ32 467 aa9.85□□□□□ -0.83
VPS50-212ENST00000476413 SFSWAPQ12872 951 aaKnown RBP9.84□□□□□ -0.83
VPS50-212ENST00000476413 DBN1Q16643 649 aa9.84□□□□□ -0.83
VPS50-212ENST00000476413 TTC16Q8NEE8 873 aa9.84□□□□□ -0.83
VPS50-212ENST00000476413 ZFYVE28Q9HCC9 887 aa9.84□□□□□ -0.83
VPS50-212ENST00000476413 NDFIP2Q9NV92 336 aa9.84□□□□□ -0.83
VPS50-212ENST00000476413 ATXN7O15265 892 aaPredicted RBP9.83□□□□□ -0.84
VPS50-212ENST00000476413 NEFLP07196 543 aa9.83□□□□□ -0.84
VPS50-212ENST00000476413 GNA15P30679 374 aa9.83□□□□□ -0.84
VPS50-212ENST00000476413 XPCQ01831 940 aaPredicted RBP9.83□□□□□ -0.84
VPS50-212ENST00000476413 TSNAXIP1Q2TAA8 658 aa9.83□□□□□ -0.84
VPS50-212ENST00000476413 CCDC155Q8N6L0 562 aa9.83□□□□□ -0.84
VPS50-212ENST00000476413 STRN4Q9NRL3 753 aa9.83□□□□□ -0.84
VPS50-212ENST00000476413 CNTN3Q9P232 1028 aa9.83□□□□□ -0.84
VPS50-212ENST00000476413 PCDHGC4Q9Y5F7 938 aa9.83□□□□□ -0.84
VPS50-212ENST00000476413 TNP2Q05952 138 aa9.82□□□□□ -0.84
VPS50-212ENST00000476413 GRIN2CQ14957 1233 aa9.82□□□□□ -0.84
VPS50-212ENST00000476413 FIGNL1Q6PIW4 674 aa9.82□□□□□ -0.84
VPS50-212ENST00000476413 PI16Q6UXB8 463 aa9.82□□□□□ -0.84
VPS50-212ENST00000476413 RIPOR1Q6ZS17 1223 aa9.82□□□□□ -0.84
VPS50-212ENST00000476413 TRIM47Q96LD4 638 aa9.82□□□□□ -0.84
VPS50-212ENST00000476413 IRX2Q9BZI1 471 aaPredicted RBP9.82□□□□□ -0.84
VPS50-212ENST00000476413 NUCKS1Q9H1E3 243 aaKnown RBP9.82□□□□□ -0.84
VPS50-212ENST00000476413 KCNH4Q9UQ05 1017 aa9.82□□□□□ -0.84
VPS50-212ENST00000476413 DCDC2BA2VCK2 349 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms