RNA–Protein interactions for RNA: ENST00000474823.5

COPS6-208, Transcript of COP9 signalosome subunit 6, human

TSL 2

Gene COPS6, Length 752 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS6-208	ENST00000474823	PDZRN3	Q9UPQ7	1066 aa		13.39	□□□□□ -0.27
COPS6-208	ENST00000474823	ARFGEF2	Q9Y6D5	1785 aa		13.39	□□□□□ -0.27
COPS6-208	ENST00000474823	PTPRC	P08575	1304 aa		13.39	□□□□□ -0.27
COPS6-208	ENST00000474823	ANKRD36C	Q5JPF3	1778 aa		13.38	□□□□□ -0.27
COPS6-208	ENST00000474823	DPEP1	P16444	411 aa		13.38	□□□□□ -0.27
COPS6-208	ENST00000474823	ERFE	Q4G0M1	354 aa		13.38	□□□□□ -0.27
COPS6-208	ENST00000474823	C2CD5	Q86YS7	1000 aa		13.38	□□□□□ -0.27
COPS6-208	ENST00000474823	CWC25	Q9NXE8	425 aa	Predicted RBP	13.38	□□□□□ -0.27
COPS6-208	ENST00000474823	SH3TC1	Q8TE82	1336 aa		13.38	□□□□□ -0.27
COPS6-208	ENST00000474823	KIF13B	Q9NQT8	1826 aa		13.37	□□□□□ -0.27
COPS6-208	ENST00000474823		F6X3S4	739 aa		13.37	□□□□□ -0.27
COPS6-208	ENST00000474823	CHRNA5	P30532	468 aa		13.37	□□□□□ -0.27
COPS6-208	ENST00000474823	GPR162	Q16538	588 aa		13.37	□□□□□ -0.27
COPS6-208	ENST00000474823	SLC4A10	Q6U841	1118 aa		13.37	□□□□□ -0.27
COPS6-208	ENST00000474823	KIF16B	Q96L93	1317 aa		13.37	□□□□□ -0.27
COPS6-208	ENST00000474823	PXDNL	A1KZ92	1463 aa		13.36	□□□□□ -0.27
COPS6-208	ENST00000474823	HSP90B1	P14625	803 aa	Known RBP	13.36	□□□□□ -0.27
COPS6-208	ENST00000474823	BRPF1	P55201	1214 aa	Predicted RBP	13.36	□□□□□ -0.27
COPS6-208	ENST00000474823	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.36	□□□□□ -0.27
COPS6-208	ENST00000474823	LINS1	Q8NG48	757 aa		13.36	□□□□□ -0.27
COPS6-208	ENST00000474823	NLRP3	Q96P20	1036 aa		13.36	□□□□□ -0.27
COPS6-208	ENST00000474823	PIM2	Q9P1W9	311 aa		13.36	□□□□□ -0.27
COPS6-208	ENST00000474823	WWC3	Q9ULE0	1092 aa		13.36	□□□□□ -0.27
COPS6-208	ENST00000474823	NOB1	Q9ULX3	412 aa	Known RBP	13.36	□□□□□ -0.27
COPS6-208	ENST00000474823	ABCC12	Q96J65	1359 aa		13.35	□□□□□ -0.27
COPS6-208	ENST00000474823	NEURL1B	A8MQ27	555 aa		13.35	□□□□□ -0.27
COPS6-208	ENST00000474823	IPO8	O15397	1037 aa	Known RBP	13.35	□□□□□ -0.27
COPS6-208	ENST00000474823	IGKV5-2	P06315	115 aa		13.35	□□□□□ -0.27
COPS6-208	ENST00000474823	CWF19L2	Q2TBE0	894 aa	Known RBP	13.35	□□□□□ -0.27
COPS6-208	ENST00000474823	RTL5	Q5HYW3	569 aa	Predicted RBP	13.35	□□□□□ -0.27
COPS6-208	ENST00000474823	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.35	□□□□□ -0.27
COPS6-208	ENST00000474823	FAM89A	Q96GI7	184 aa		13.35	□□□□□ -0.27
COPS6-208	ENST00000474823	API5	Q9BZZ5	524 aa	Known RBP	13.35	□□□□□ -0.27
COPS6-208	ENST00000474823	RIC1	Q4ADV7	1423 aa		13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	PCCA	P05165	728 aa	Predicted RBP	13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	HCLS1	P14317	486 aa	Predicted RBP	13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	DALRD3	Q5D0E6	543 aa	Known RBP	13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	SLC10A5	Q5PT55	438 aa		13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	BEND3	Q5T5X7	828 aa		13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	RPGR	Q92834	1020 aa	Known RBP	13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	FRAT1	Q92837	279 aa	Predicted RBP	13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	MASTL	Q96GX5	879 aa		13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	SRCIN1	Q9C0H9	1055 aa		13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	BCS1L	Q9Y276	419 aa		13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.34	□□□□□ -0.27
COPS6-208	ENST00000474823	KLRG2	A4D1S0	409 aa	Predicted RBP	13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	IRS4	O14654	1257 aa	Predicted RBP	13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	BCAR3	O75815	825 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	ALDH1L1	O75891	902 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	SRGN	P10124	158 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	NPR1	P16066	1061 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	KCNA3	P22001	575 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	GCKR	Q14397	625 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	STYK1	Q6J9G0	422 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	SYNE4	Q8N205	404 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	TTLL6	Q8N841	843 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	ARHGAP45	Q92619	1136 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	CNKSR1	Q969H4	720 aa		13.33	□□□□□ -0.28
COPS6-208	ENST00000474823	ANKRD31	Q8N7Z5	1873 aa		13.32	□□□□□ -0.28
COPS6-208	ENST00000474823	GRIN3B	O60391	1043 aa		13.32	□□□□□ -0.28
COPS6-208	ENST00000474823	RBM17	Q96I25	401 aa	Known RBP	13.32	□□□□□ -0.28
COPS6-208	ENST00000474823	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.32	□□□□□ -0.28
COPS6-208	ENST00000474823	KIAA1551	Q9HCM1	1747 aa		13.31	□□□□□ -0.28
COPS6-208	ENST00000474823	ALDH1B1	P30837	517 aa		13.31	□□□□□ -0.28
COPS6-208	ENST00000474823	CRY2	Q49AN0	593 aa		13.31	□□□□□ -0.28
COPS6-208	ENST00000474823	ZKSCAN2	Q63HK3	967 aa		13.31	□□□□□ -0.28
COPS6-208	ENST00000474823	UBE3B	Q7Z3V4	1068 aa		13.31	□□□□□ -0.28
COPS6-208	ENST00000474823	JARID2	Q92833	1246 aa	Predicted RBP	13.31	□□□□□ -0.28
COPS6-208	ENST00000474823	CDHR2	Q9BYE9	1310 aa		13.31	□□□□□ -0.28
COPS6-208	ENST00000474823		H7C1W4	665 aa		13.3	□□□□□ -0.28
COPS6-208	ENST00000474823	PDE8A	O60658	829 aa		13.3	□□□□□ -0.28
COPS6-208	ENST00000474823	YBX3	P16989	372 aa	Known RBP eCLIP	13.3	□□□□□ -0.28	9e-7	■■■□□ 15.5
COPS6-208	ENST00000474823	CCT4	P50991	539 aa	Known RBP	13.3	□□□□□ -0.28
COPS6-208	ENST00000474823	ATF7IP	Q6VMQ6	1270 aa		13.3	□□□□□ -0.28
COPS6-208	ENST00000474823	RCAN3	Q9UKA8	241 aa		13.3	□□□□□ -0.28
COPS6-208	ENST00000474823	GRM8	O00222	908 aa		13.29	□□□□□ -0.28
COPS6-208	ENST00000474823	C3orf67	Q6ZVT6	689 aa		13.29	□□□□□ -0.28
COPS6-208	ENST00000474823	DDX46	Q7L014	1031 aa	Known RBP	13.29	□□□□□ -0.28
COPS6-208	ENST00000474823	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.28	□□□□□ -0.28
COPS6-208	ENST00000474823	DLEC1	Q9Y238	1755 aa		13.28	□□□□□ -0.28
COPS6-208	ENST00000474823	TRIM27	P14373	513 aa		13.28	□□□□□ -0.28
COPS6-208	ENST00000474823	HOXA10	P31260	410 aa	Predicted RBP	13.28	□□□□□ -0.28
COPS6-208	ENST00000474823	SF3B3	Q15393	1217 aa	Known RBP	13.28	□□□□□ -0.28
COPS6-208	ENST00000474823	CCDC152	Q4G0S7	254 aa		13.28	□□□□□ -0.28
COPS6-208	ENST00000474823	PRPF40B	Q6NWY9	871 aa	Known RBP	13.28	□□□□□ -0.28
COPS6-208	ENST00000474823	FTSJ3	Q8IY81	847 aa	Known RBP	13.28	□□□□□ -0.28
COPS6-208	ENST00000474823	CRAMP1	Q96RY5	1269 aa		13.28	□□□□□ -0.28
COPS6-208	ENST00000474823	TMX4	Q9H1E5	349 aa	Predicted RBP	13.28	□□□□□ -0.28
COPS6-208	ENST00000474823	COL11A2	P13942	1736 aa	Predicted RBP	13.27	□□□□□ -0.28
COPS6-208	ENST00000474823	CTSW	P56202	376 aa		13.27	□□□□□ -0.29
COPS6-208	ENST00000474823	SOGA3	Q5TF21	947 aa		13.27	□□□□□ -0.29
COPS6-208	ENST00000474823	CLUAP1	Q96AJ1	413 aa		13.27	□□□□□ -0.29
COPS6-208	ENST00000474823	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.27	□□□□□ -0.29
COPS6-208	ENST00000474823	BRCA1	P38398	1863 aa	Known RBP	13.27	□□□□□ -0.29
COPS6-208	ENST00000474823	ABCC4	O15439	1325 aa		13.26	□□□□□ -0.29
COPS6-208	ENST00000474823	C21orf2	O43822	256 aa		13.26	□□□□□ -0.29
COPS6-208	ENST00000474823	CASP7	P55210	303 aa		13.26	□□□□□ -0.29
COPS6-208	ENST00000474823	ARHGAP27	Q6ZUM4	889 aa		13.26	□□□□□ -0.29
COPS6-208	ENST00000474823	PLA2G12B	Q9BX93	195 aa		13.26	□□□□□ -0.29
COPS6-208	ENST00000474823	DDX60	Q8IY21	1712 aa	Known RBP	13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms