RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 C16orf71Q8IYS4 520 aaPredicted RBP11.75□□□□□ -0.53
USF1-204ENST00000472217 RBM46Q8TBY0 533 aaKnown RBP11.75□□□□□ -0.53
USF1-204ENST00000472217 WDR90Q96KV7 1748 aa11.74□□□□□ -0.53
USF1-204ENST00000472217 DUSP27Q5VZP5 1158 aa11.74□□□□□ -0.53
USF1-204ENST00000472217 C3orf67Q6ZVT6 689 aa11.74□□□□□ -0.53
USF1-204ENST00000472217 RPGRQ92834 1020 aaKnown RBP11.74□□□□□ -0.53
USF1-204ENST00000472217 IFT57Q9NWB7 429 aa11.74□□□□□ -0.53
USF1-204ENST00000472217 SNED1Q8TER0 1413 aa11.74□□□□□ -0.53
USF1-204ENST00000472217 LAMB2P55268 1798 aa11.74□□□□□ -0.53
USF1-204ENST00000472217 HOXA10P31260 410 aaPredicted RBP11.73□□□□□ -0.53
USF1-204ENST00000472217 GNAI1P63096 354 aa11.73□□□□□ -0.53
USF1-204ENST00000472217 FKBP4Q02790 459 aaKnown RBP eCLIP11.73□□□□□ -0.53
USF1-204ENST00000472217 CALD1Q05682 793 aaKnown RBP11.73□□□□□ -0.53
USF1-204ENST00000472217 HSP90AB3PQ58FF7 597 aa11.73□□□□□ -0.53
USF1-204ENST00000472217 DPY19L2Q6NUT2 758 aa11.73□□□□□ -0.53
USF1-204ENST00000472217 NLRP10Q86W26 655 aa11.73□□□□□ -0.53
USF1-204ENST00000472217 UTP14AQ9BVJ6 771 aaKnown RBP11.73□□□□□ -0.53
USF1-204ENST00000472217 DBF4Q9UBU7 674 aaPredicted RBP11.73□□□□□ -0.53
USF1-204ENST00000472217 RNF123Q5XPI4 1314 aa11.72□□□□□ -0.53
USF1-204ENST00000472217 VEGFAP15692 232 aaPredicted RBP11.72□□□□□ -0.53
USF1-204ENST00000472217 TCIRG1Q13488 830 aa11.72□□□□□ -0.53
USF1-204ENST00000472217 RTKN2Q8IZC4 609 aa11.72□□□□□ -0.53
USF1-204ENST00000472217 POTECB2RU33 542 aa11.71□□□□□ -0.53
USF1-204ENST00000472217 ELL2O00472 640 aaPredicted RBP11.71□□□□□ -0.53
USF1-204ENST00000472217 FSTL1Q12841 308 aa11.71□□□□□ -0.53
USF1-204ENST00000472217 SLC10A5Q5PT55 438 aa11.71□□□□□ -0.53
USF1-204ENST00000472217 SLC51AQ86UW1 340 aa11.71□□□□□ -0.53
USF1-204ENST00000472217 SYNE4Q8N205 404 aa11.71□□□□□ -0.53
USF1-204ENST00000472217 PLBD2Q8NHP8 589 aa11.71□□□□□ -0.53
USF1-204ENST00000472217 RBM17Q96I25 401 aaKnown RBP11.71□□□□□ -0.53
USF1-204ENST00000472217 NLRP3Q96P20 1036 aa11.71□□□□□ -0.53
USF1-204ENST00000472217 CRAMP1Q96RY5 1269 aa11.71□□□□□ -0.53
USF1-204ENST00000472217 MRS2Q9HD23 443 aa11.71□□□□□ -0.53
USF1-204ENST00000472217 ZNF277Q9NRM2 450 aaPredicted RBP11.71□□□□□ -0.53
USF1-204ENST00000472217 HYPKQ9NX55 129 aa11.71□□□□□ -0.53
USF1-204ENST00000472217 DDX60Q8IY21 1712 aaKnown RBP11.71□□□□□ -0.54
USF1-204ENST00000472217 PPEF1O14829 653 aaPredicted RBP11.7□□□□□ -0.54
USF1-204ENST00000472217 ANP32CO43423 234 aa11.7□□□□□ -0.54
USF1-204ENST00000472217 DDNO94850 711 aaPredicted RBP11.7□□□□□ -0.54
USF1-204ENST00000472217 APLP1P51693 650 aa11.7□□□□□ -0.54
USF1-204ENST00000472217 ANKRD13DQ6ZTN6 518 aa11.7□□□□□ -0.54
USF1-204ENST00000472217 SMC1BQ8NDV3 1235 aa11.7□□□□□ -0.54
USF1-204ENST00000472217 ZNF428Q96B54 188 aa11.7□□□□□ -0.54
USF1-204ENST00000472217 TRMT112Q9UI30 125 aaKnown RBP11.7□□□□□ -0.54
USF1-204ENST00000472217 COL4A5P29400 1685 aa11.69□□□□□ -0.54
USF1-204ENST00000472217 SH3TC1Q8TE82 1336 aa11.69□□□□□ -0.54
USF1-204ENST00000472217 TCERG1O14776 1098 aaKnown RBP11.69□□□□□ -0.54
USF1-204ENST00000472217 HCLS1P14317 486 aaPredicted RBP11.69□□□□□ -0.54
USF1-204ENST00000472217 CC2D2BQ6DHV5 1058 aa11.69□□□□□ -0.54
USF1-204ENST00000472217 C8orf58Q8NAV2 365 aa11.69□□□□□ -0.54
USF1-204ENST00000472217 PSMD1Q99460 953 aa11.69□□□□□ -0.54
USF1-204ENST00000472217 PHAXQ9H814 394 aaKnown RBP11.69□□□□□ -0.54
USF1-204ENST00000472217 ABCC4O15439 1325 aa11.68□□□□□ -0.54
USF1-204ENST00000472217 ZNF541Q9H0D2 1346 aa11.68□□□□□ -0.54
USF1-204ENST00000472217 ATP5J2-PTCD1G3V325 749 aa11.68□□□□□ -0.54
USF1-204ENST00000472217 IARSP41252 1262 aaKnown RBP11.68□□□□□ -0.54
USF1-204ENST00000472217 CCDC27Q2M243 656 aa11.68□□□□□ -0.54
USF1-204ENST00000472217 WWC1Q8IX03 1113 aa11.68□□□□□ -0.54
USF1-204ENST00000472217 TSR2Q969E8 191 aaKnown RBP11.68□□□□□ -0.54
USF1-204ENST00000472217 ISCA1Q9BUE6 129 aa11.68□□□□□ -0.54
USF1-204ENST00000472217 TSPYL6Q8N831 410 aa11.67□□□□□ -0.54
USF1-204ENST00000472217 LRRC37AA6NMS7 1700 aa11.66□□□□□ -0.54
USF1-204ENST00000472217 TAF1P21675 1872 aa11.66□□□□□ -0.54
USF1-204ENST00000472217 SCN4AP35499 1836 aa11.66□□□□□ -0.54
USF1-204ENST00000472217 FZD9O00144 591 aa11.66□□□□□ -0.54
USF1-204ENST00000472217 HTRA3P83110 453 aa11.66□□□□□ -0.54
USF1-204ENST00000472217 GOLGA2Q08379 1002 aa11.66□□□□□ -0.54
USF1-204ENST00000472217 GRIPAP1Q4V328 841 aa11.66□□□□□ -0.54
USF1-204ENST00000472217 RIC3Q7Z5B4 369 aa11.66□□□□□ -0.54
USF1-204ENST00000472217 FAM89AQ96GI7 184 aa11.66□□□□□ -0.54
USF1-204ENST00000472217 L3MBTL3Q96JM7 780 aaPredicted RBP11.66□□□□□ -0.54
USF1-204ENST00000472217 ATP6V0A2Q9Y487 856 aa11.66□□□□□ -0.54
USF1-204ENST00000472217 COL4A1P02462 1669 aa11.65□□□□□ -0.54
USF1-204ENST00000472217 IL16Q14005 1332 aa11.65□□□□□ -0.54
USF1-204ENST00000472217 POTEIP0CG38 1075 aa11.65□□□□□ -0.54
USF1-204ENST00000472217 POTEJP0CG39 1038 aa11.65□□□□□ -0.54
USF1-204ENST00000472217 TRIM28Q13263 835 aaKnown RBP11.65□□□□□ -0.54
USF1-204ENST00000472217 CCDC30Q5VVM6 783 aa11.65□□□□□ -0.54
USF1-204ENST00000472217 PPP4R3CPQ6ZMV5 832 aa11.65□□□□□ -0.54
USF1-204ENST00000472217 DDX46Q7L014 1031 aaKnown RBP11.65□□□□□ -0.54
USF1-204ENST00000472217 DNAJC5GQ8N7S2 189 aa11.65□□□□□ -0.54
USF1-204ENST00000472217 JDP2Q8WYK2 163 aa11.65□□□□□ -0.54
USF1-204ENST00000472217 IQCA1LA6NCM1 817 aa11.64□□□□□ -0.55
USF1-204ENST00000472217 BBOX1O75936 387 aa11.64□□□□□ -0.55
USF1-204ENST00000472217 GRAPQ13588 217 aa11.64□□□□□ -0.55
USF1-204ENST00000472217 NCBP3Q53F19 620 aaKnown RBP11.64□□□□□ -0.55
USF1-204ENST00000472217 RTL5Q5HYW3 569 aaPredicted RBP11.64□□□□□ -0.55
USF1-204ENST00000472217 LARGE2Q8N3Y3 721 aa11.64□□□□□ -0.55
USF1-204ENST00000472217 GRAPLQ8TC17 118 aaPredicted RBP11.64□□□□□ -0.55
USF1-204ENST00000472217 MYD88Q99836 296 aa11.64□□□□□ -0.55
USF1-204ENST00000472217 CHMP4AQ9BY43 222 aa11.64□□□□□ -0.55
USF1-204ENST00000472217 TMX4Q9H1E5 349 aaPredicted RBP11.64□□□□□ -0.55
USF1-204ENST00000472217 ADAMTSL1Q8N6G6 1762 aa11.64□□□□□ -0.55
USF1-204ENST00000472217 DUOX1Q9NRD9 1551 aa11.63□□□□□ -0.55
USF1-204ENST00000472217 AOC3Q16853 763 aa11.63□□□□□ -0.55
USF1-204ENST00000472217 TWISTNBQ3B726 338 aaPredicted RBP11.63□□□□□ -0.55
USF1-204ENST00000472217 CHADLQ6NUI6 762 aa11.63□□□□□ -0.55
USF1-204ENST00000472217 SP8Q8IXZ3 490 aa11.63□□□□□ -0.55
USF1-204ENST00000472217 GPC2Q8N158 579 aa11.63□□□□□ -0.55
USF1-204ENST00000472217 TAF1DQ9H5J8 278 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms