RNA–Protein interactions for RNA: ENST00000471894.1

PUM1-208, Transcript of pumilio RNA binding family member 1, human

TSL 3

Gene PUM1, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUM1-208	ENST00000471894	JARID2	Q92833	1246 aa	Predicted RBP	13.22	□□□□□ -0.29
PUM1-208	ENST00000471894	CCDC136	Q96JN2	1154 aa		13.22	□□□□□ -0.29
PUM1-208	ENST00000471894	C1orf115	Q9H7X2	142 aa		13.22	□□□□□ -0.29
PUM1-208	ENST00000471894	BCL2L12	Q9HB09	334 aa		13.22	□□□□□ -0.29
PUM1-208	ENST00000471894	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.22	□□□□□ -0.29
PUM1-208	ENST00000471894	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.22	□□□□□ -0.29	2e-60	■■■■■ 52.7
PUM1-208	ENST00000471894		H7C1W4	665 aa		13.21	□□□□□ -0.29
PUM1-208	ENST00000471894	PARP10	Q53GL7	1025 aa		13.21	□□□□□ -0.29
PUM1-208	ENST00000471894	TBC1D9B	Q66K14	1250 aa		13.21	□□□□□ -0.29
PUM1-208	ENST00000471894	UBE3B	Q7Z3V4	1068 aa		13.21	□□□□□ -0.29
PUM1-208	ENST00000471894	PCDHB15	Q9Y5E8	787 aa		13.21	□□□□□ -0.29
PUM1-208	ENST00000471894	LRRFIP2	Q9Y608	721 aa	Known RBP	13.21	□□□□□ -0.29
PUM1-208	ENST00000471894	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	ANKRD36C	Q5JPF3	1778 aa		13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	BCOR	Q6W2J9	1755 aa		13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	UTY	O14607	1347 aa		13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	FAM177B	A6PVY3	158 aa		13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	RTL5	Q5HYW3	569 aa	Predicted RBP	13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	SUSD4	Q5VX71	490 aa		13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	B4GALNT3	Q6L9W6	998 aa		13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	PPP1R42	Q7Z4L9	355 aa		13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	SETDB2	Q96T68	719 aa		13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	TRMT112	Q9UI30	125 aa	Known RBP	13.2	□□□□□ -0.3
PUM1-208	ENST00000471894	C4A	P0C0L4	1744 aa		13.19	□□□□□ -0.3
PUM1-208	ENST00000471894	UBN2	Q6ZU65	1347 aa		13.19	□□□□□ -0.3
PUM1-208	ENST00000471894	PNPLA7	Q6ZV29	1317 aa		13.19	□□□□□ -0.3
PUM1-208	ENST00000471894	PCCA	P05165	728 aa	Predicted RBP	13.19	□□□□□ -0.3
PUM1-208	ENST00000471894	GYS1	P13807	737 aa		13.19	□□□□□ -0.3
PUM1-208	ENST00000471894	FAM89A	Q96GI7	184 aa		13.19	□□□□□ -0.3
PUM1-208	ENST00000471894	UTP14A	Q9BVJ6	771 aa	Known RBP	13.19	□□□□□ -0.3
PUM1-208	ENST00000471894	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.18	□□□□□ -0.3
PUM1-208	ENST00000471894	SUCLG2	Q96I99	432 aa		13.18	□□□□□ -0.3
PUM1-208	ENST00000471894	RWDD1	Q9H446	243 aa	Predicted RBP	13.18	□□□□□ -0.3
PUM1-208	ENST00000471894	SCN7A	Q01118	1682 aa		13.18	□□□□□ -0.3
PUM1-208	ENST00000471894	TUBGCP6	Q96RT7	1819 aa		13.18	□□□□□ -0.3
PUM1-208	ENST00000471894	GTF2E1	P29083	439 aa	Predicted RBP	13.17	□□□□□ -0.3
PUM1-208	ENST00000471894	CASP7	P55210	303 aa		13.17	□□□□□ -0.3
PUM1-208	ENST00000471894	NFIX	Q14938	502 aa		13.17	□□□□□ -0.3
PUM1-208	ENST00000471894	CEP85	Q6P2H3	762 aa		13.17	□□□□□ -0.3
PUM1-208	ENST00000471894	NLGN1	Q8N2Q7	840 aa		13.17	□□□□□ -0.3
PUM1-208	ENST00000471894	ANKRD44	Q8N8A2	993 aa		13.17	□□□□□ -0.3
PUM1-208	ENST00000471894	IRS4	O14654	1257 aa	Predicted RBP	13.16	□□□□□ -0.3
PUM1-208	ENST00000471894	NPHP1	O15259	732 aa		13.16	□□□□□ -0.3
PUM1-208	ENST00000471894	ATP8B2	P98198	1209 aa		13.16	□□□□□ -0.3
PUM1-208	ENST00000471894	TPTE2	Q6XPS3	522 aa		13.16	□□□□□ -0.3
PUM1-208	ENST00000471894	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.16	□□□□□ -0.3
PUM1-208	ENST00000471894	SYNE4	Q8N205	404 aa		13.16	□□□□□ -0.3
PUM1-208	ENST00000471894	NYX	Q9GZU5	481 aa		13.16	□□□□□ -0.3
PUM1-208	ENST00000471894	BICC1	Q9H694	974 aa	Known RBP	13.16	□□□□□ -0.3
PUM1-208	ENST00000471894	SH3TC1	Q8TE82	1336 aa		13.15	□□□□□ -0.3
PUM1-208	ENST00000471894	HMMR	O75330	724 aa		13.15	□□□□□ -0.3
PUM1-208	ENST00000471894	NTSR2	O95665	410 aa		13.15	□□□□□ -0.3
PUM1-208	ENST00000471894	IGHD	P01880	384 aa		13.15	□□□□□ -0.3
PUM1-208	ENST00000471894	HSP90B1	P14625	803 aa	Known RBP	13.15	□□□□□ -0.3
PUM1-208	ENST00000471894	TM4SF1	P30408	202 aa		13.15	□□□□□ -0.3
PUM1-208	ENST00000471894	NUTM1	Q86Y26	1132 aa		13.15	□□□□□ -0.3
PUM1-208	ENST00000471894	SIRT2	Q8IXJ6	389 aa		13.15	□□□□□ -0.3
PUM1-208	ENST00000471894	CNKSR2	Q8WXI2	1034 aa		13.15	□□□□□ -0.3
PUM1-208	ENST00000471894	KAZALD1	Q96I82	304 aa		13.15	□□□□□ -0.3
PUM1-208	ENST00000471894	CDHR2	Q9BYE9	1310 aa		13.14	□□□□□ -0.31
PUM1-208	ENST00000471894	FOXO4	P98177	505 aa		13.14	□□□□□ -0.31
PUM1-208	ENST00000471894	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.14	□□□□□ -0.31
PUM1-208	ENST00000471894	HDAC1	Q13547	482 aa	Predicted RBP	13.14	□□□□□ -0.31
PUM1-208	ENST00000471894	EPHA10	Q5JZY3	1008 aa		13.14	□□□□□ -0.31
PUM1-208	ENST00000471894	CARMIL3	Q8ND23	1372 aa		13.14	□□□□□ -0.31
PUM1-208	ENST00000471894	QSER1	Q2KHR3	1735 aa		13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	PNMA6E	A0A0J9YXQ4	647 aa		13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	SRGAP3	O43295	1099 aa		13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	PDE8A	O60658	829 aa		13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	SERPINB2	P05120	415 aa		13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	HCLS1	P14317	486 aa	Predicted RBP	13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	ERFE	Q4G0M1	354 aa		13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	MSL1	Q68DK7	614 aa		13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	LMBR1L	Q6UX01	489 aa		13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	PLA2G12B	Q9BX93	195 aa		13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	CHMP3	Q9Y3E7	222 aa		13.13	□□□□□ -0.31
PUM1-208	ENST00000471894	MTX1	Q13505	466 aa		13.12	□□□□□ -0.31
PUM1-208	ENST00000471894	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.12	□□□□□ -0.31
PUM1-208	ENST00000471894	SLC16A10	Q8TF71	515 aa		13.12	□□□□□ -0.31
PUM1-208	ENST00000471894	PARP3	Q9Y6F1	533 aa		13.12	□□□□□ -0.31
PUM1-208	ENST00000471894	POLRMT	O00411	1230 aa	Known RBP	13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	MMP10	P09238	476 aa		13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	CTSW	P56202	376 aa		13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	DDR1	Q08345	913 aa		13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	POLA2	Q14181	598 aa		13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	R3HDM1	Q15032	1099 aa	Known RBP	13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	RABL6	Q3YEC7	729 aa	Predicted RBP	13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	SLC10A5	Q5PT55	438 aa		13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	CCDC24	Q8N4L8	307 aa		13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	CNBD1	Q8NA66	436 aa		13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	SSH3	Q8TE77	659 aa		13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	PDGFD	Q9GZP0	370 aa	Predicted RBP	13.11	□□□□□ -0.31
PUM1-208	ENST00000471894	CSF1R	P07333	972 aa		13.1	□□□□□ -0.31
PUM1-208	ENST00000471894	ST5	P78524	1137 aa		13.1	□□□□□ -0.31
PUM1-208	ENST00000471894	TTLL11	Q8NHH1	800 aa		13.1	□□□□□ -0.31
PUM1-208	ENST00000471894	NLRP3	Q96P20	1036 aa		13.1	□□□□□ -0.31
PUM1-208	ENST00000471894	CCDC85A	Q96PX6	553 aa	Predicted RBP	13.1	□□□□□ -0.31
PUM1-208	ENST00000471894	DCTPP1	Q9H773	170 aa		13.1	□□□□□ -0.31
PUM1-208	ENST00000471894	COL24A1	Q17RW2	1714 aa		13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms