RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 NLRP3Q96P20 1036 aa17.38■□□□□ 0.37
CPSF4-210ENST00000469897 UTP14AQ9BVJ6 771 aaKnown RBP17.38■□□□□ 0.37
CPSF4-210ENST00000469897 SLC10A5Q5PT55 438 aa17.37■□□□□ 0.37
CPSF4-210ENST00000469897 CC2D2BQ6DHV5 1058 aa17.37■□□□□ 0.37
CPSF4-210ENST00000469897 SLC51AQ86UW1 340 aa17.37■□□□□ 0.37
CPSF4-210ENST00000469897 CRAMP1Q96RY5 1269 aa17.37■□□□□ 0.37
CPSF4-210ENST00000469897 ZNF541Q9H0D2 1346 aa17.37■□□□□ 0.37
CPSF4-210ENST00000469897 BCORQ6W2J9 1755 aa17.37■□□□□ 0.37
CPSF4-210ENST00000469897 IQCA1LA6NCM1 817 aa17.36■□□□□ 0.37
CPSF4-210ENST00000469897 FZD9O00144 591 aa17.36■□□□□ 0.37
CPSF4-210ENST00000469897 JDP2Q8WYK2 163 aa17.36■□□□□ 0.37
CPSF4-210ENST00000469897 L3MBTL3Q96JM7 780 aaPredicted RBP17.36■□□□□ 0.37
CPSF4-210ENST00000469897 PSMD1Q99460 953 aa17.36■□□□□ 0.37
CPSF4-210ENST00000469897 TAF1DQ9H5J8 278 aaPredicted RBP17.36■□□□□ 0.37
CPSF4-210ENST00000469897 EAPPQ56P03 285 aaPredicted RBP17.35■□□□□ 0.37
CPSF4-210ENST00000469897 ZNF428Q96B54 188 aa17.35■□□□□ 0.37
CPSF4-210ENST00000469897 DDX21Q9NR30 783 aaKnown RBP eCLIP17.35■□□□□ 0.37
CPSF4-210ENST00000469897 PPEF1O14829 653 aaPredicted RBP17.34■□□□□ 0.37
CPSF4-210ENST00000469897 HCLS1P14317 486 aaPredicted RBP17.34■□□□□ 0.37
CPSF4-210ENST00000469897 TCIRG1Q13488 830 aa17.34■□□□□ 0.37
CPSF4-210ENST00000469897 NLRP10Q86W26 655 aa17.34■□□□□ 0.37
CPSF4-210ENST00000469897 PRKRIP1Q9H875 184 aaPredicted RBP17.34■□□□□ 0.37
CPSF4-210ENST00000469897 TNRC6CQ9HCJ0 1690 aaKnown RBP17.34■□□□□ 0.37
CPSF4-210ENST00000469897 HACL1Q9UJ83 578 aa17.34■□□□□ 0.37
CPSF4-210ENST00000469897 CLEC11AQ9Y240 323 aa17.34■□□□□ 0.37
CPSF4-210ENST00000469897 IBTKQ9P2D0 1353 aaPredicted RBP17.33■□□□□ 0.36
CPSF4-210ENST00000469897 HSP90AB3PQ58FF7 597 aa17.33■□□□□ 0.36
CPSF4-210ENST00000469897 LDHDQ86WU2 507 aa17.33■□□□□ 0.36
CPSF4-210ENST00000469897 CHPF2Q9P2E5 772 aa17.33■□□□□ 0.36
CPSF4-210ENST00000469897 TRMT112Q9UI30 125 aaKnown RBP17.33■□□□□ 0.36
CPSF4-210ENST00000469897 GJA3Q9Y6H8 435 aa17.33■□□□□ 0.36
CPSF4-210ENST00000469897 KDM3BQ7LBC6 1761 aa17.33■□□□□ 0.36
CPSF4-210ENST00000469897 EPHX2P34913 555 aa17.32■□□□□ 0.36
CPSF4-210ENST00000469897 GRIPAP1Q4V328 841 aa17.32■□□□□ 0.36
CPSF4-210ENST00000469897 GPC2Q8N158 579 aa17.32■□□□□ 0.36
CPSF4-210ENST00000469897 LARGE2Q8N3Y3 721 aa17.32■□□□□ 0.36
CPSF4-210ENST00000469897 TMX4Q9H1E5 349 aaPredicted RBP17.32■□□□□ 0.36
CPSF4-210ENST00000469897 FER1L6Q2WGJ9 1857 aa17.31■□□□□ 0.36
CPSF4-210ENST00000469897 RNF123Q5XPI4 1314 aa17.31■□□□□ 0.36
CPSF4-210ENST00000469897 WDR90Q96KV7 1748 aa17.31■□□□□ 0.36
CPSF4-210ENST00000469897 EIF6P56537 245 aaKnown RBP17.31■□□□□ 0.36
CPSF4-210ENST00000469897 HDGFL1Q5TGJ6 251 aa17.31■□□□□ 0.36
CPSF4-210ENST00000469897 CFAP44Q96MT7 982 aa17.31■□□□□ 0.36
CPSF4-210ENST00000469897 ATP6V0A2Q9Y487 856 aa17.31■□□□□ 0.36
CPSF4-210ENST00000469897 APAF1O14727 1248 aa17.3■□□□□ 0.36
CPSF4-210ENST00000469897 ITGBL1O95965 494 aaPredicted RBP17.3■□□□□ 0.36
CPSF4-210ENST00000469897 COL13A1Q5TAT6 717 aaPredicted RBP17.3■□□□□ 0.36
CPSF4-210ENST00000469897 ANKRD13DQ6ZTN6 518 aa17.3■□□□□ 0.36
CPSF4-210ENST00000469897 PNMA8AQ86V59 439 aaPredicted RBP17.3■□□□□ 0.36
CPSF4-210ENST00000469897 CREBZFQ9NS37 354 aa17.3■□□□□ 0.36
CPSF4-210ENST00000469897 MKRN1Q9UHC7 482 aaKnown RBP17.3■□□□□ 0.36
CPSF4-210ENST00000469897 TIAM2Q8IVF5 1701 aa17.3■□□□□ 0.36
CPSF4-210ENST00000469897 RIC1Q4ADV7 1423 aa17.3■□□□□ 0.36
CPSF4-210ENST00000469897 SNED1Q8TER0 1413 aa17.3■□□□□ 0.36
CPSF4-210ENST00000469897 DLG5Q8TDM6 1919 aa17.29■□□□□ 0.36
CPSF4-210ENST00000469897 BBOX1O75936 387 aa17.29■□□□□ 0.36
CPSF4-210ENST00000469897 DUSP27Q5VZP5 1158 aa17.29■□□□□ 0.36
CPSF4-210ENST00000469897 MBIPQ9NS73 344 aa17.29■□□□□ 0.36
CPSF4-210ENST00000469897 DBF4Q9UBU7 674 aaPredicted RBP17.29■□□□□ 0.36
CPSF4-210ENST00000469897 ABCC4O15439 1325 aa17.28■□□□□ 0.36
CPSF4-210ENST00000469897 SH3TC1Q8TE82 1336 aa17.28■□□□□ 0.36
CPSF4-210ENST00000469897 PASKQ96RG2 1323 aa17.28■□□□□ 0.36
CPSF4-210ENST00000469897 ATP5J2-PTCD1G3V325 749 aa17.28■□□□□ 0.36
CPSF4-210ENST00000469897 ELL2O00472 640 aaPredicted RBP17.28■□□□□ 0.36
CPSF4-210ENST00000469897 AOC3Q16853 763 aa17.28■□□□□ 0.36
CPSF4-210ENST00000469897 MAP1SQ66K74 1059 aaPredicted RBP17.28■□□□□ 0.36
CPSF4-210ENST00000469897 SP8Q8IXZ3 490 aa17.28■□□□□ 0.36
CPSF4-210ENST00000469897 PLBD2Q8NHP8 589 aa17.28■□□□□ 0.36
CPSF4-210ENST00000469897 LAMB4A4D0S4 1761 aa17.28■□□□□ 0.36
CPSF4-210ENST00000469897 PPIP5K2O43314 1243 aa17.27■□□□□ 0.36
CPSF4-210ENST00000469897 HOXB7P09629 217 aa17.27■□□□□ 0.36
CPSF4-210ENST00000469897 EPS15P42566 896 aa17.27■□□□□ 0.36
CPSF4-210ENST00000469897 DDX46Q7L014 1031 aaKnown RBP17.27■□□□□ 0.36
CPSF4-210ENST00000469897 NIM1KQ8IY84 436 aa17.27■□□□□ 0.36
CPSF4-210ENST00000469897 CNTROBQ8N137 903 aa17.27■□□□□ 0.36
CPSF4-210ENST00000469897 ZNF853P0CG23 659 aa17.26■□□□□ 0.35
CPSF4-210ENST00000469897 HSPA1AP0DMV8 641 aaKnown RBP17.26■□□□□ 0.35
CPSF4-210ENST00000469897 HSPA1BP0DMV9 641 aaKnown RBP17.26■□□□□ 0.35
CPSF4-210ENST00000469897 DPP8Q6V1X1 898 aaPredicted RBP17.26■□□□□ 0.35
CPSF4-210ENST00000469897 FAM89AQ96GI7 184 aa17.26■□□□□ 0.35
CPSF4-210ENST00000469897 HYPKQ9NX55 129 aa17.26■□□□□ 0.35
CPSF4-210ENST00000469897 CCDC88AQ3V6T2 1871 aa17.25■□□□□ 0.35
CPSF4-210ENST00000469897 TMEM88BA6NKF7 163 aa17.25■□□□□ 0.35
CPSF4-210ENST00000469897 LMOD1P29536 600 aaPredicted RBP17.25■□□□□ 0.35
CPSF4-210ENST00000469897 RTL5Q5HYW3 569 aaPredicted RBP17.25■□□□□ 0.35
CPSF4-210ENST00000469897 MPNDQ8N594 471 aa17.25■□□□□ 0.35
CPSF4-210ENST00000469897 SUPT20HQ8NEM7 779 aa17.25■□□□□ 0.35
CPSF4-210ENST00000469897 ISCA1Q9BUE6 129 aa17.25■□□□□ 0.35
CPSF4-210ENST00000469897 VPS33BQ9H267 617 aa17.25■□□□□ 0.35
CPSF4-210ENST00000469897 SCNN1DP51172 638 aa17.24■□□□□ 0.35
CPSF4-210ENST00000469897 GRAPQ13588 217 aa17.24■□□□□ 0.35
CPSF4-210ENST00000469897 GRAPLQ8TC17 118 aaPredicted RBP17.24■□□□□ 0.35
CPSF4-210ENST00000469897 RTFDC1Q9BY42 306 aaPredicted RBP17.24■□□□□ 0.35
CPSF4-210ENST00000469897 PHAXQ9H814 394 aaKnown RBP17.24■□□□□ 0.35
CPSF4-210ENST00000469897 ZNRF3Q9ULT6 936 aa17.24■□□□□ 0.35
CPSF4-210ENST00000469897 GNAI1P63096 354 aa17.23■□□□□ 0.35
CPSF4-210ENST00000469897 CXCL9Q07325 125 aa17.23■□□□□ 0.35
CPSF4-210ENST00000469897 RIC3Q7Z5B4 369 aa17.23■□□□□ 0.35
CPSF4-210ENST00000469897 IFT57Q9NWB7 429 aa17.23■□□□□ 0.35
CPSF4-210ENST00000469897 COL4A5P29400 1685 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms