RNA–Protein interactions for RNA: ENST00000469415.1

MCF2L-221, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 3,027 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-221ENST00000469415 A0A0G2JS52 829 aa21.44■■□□□ 1.02
MCF2L-221ENST00000469415 PLCB2Q00722 1185 aa21.44■■□□□ 1.02
MCF2L-221ENST00000469415 LIMCH1Q9UPQ0 1083 aa21.44■■□□□ 1.02
MCF2L-221ENST00000469415 A1BGP04217 495 aa21.44■■□□□ 1.02
MCF2L-221ENST00000469415 PRDM11Q9NQV5 511 aa21.44■■□□□ 1.02
MCF2L-221ENST00000469415 SYT1P21579 422 aa21.43■■□□□ 1.02
MCF2L-221ENST00000469415 FOSBP53539 338 aa21.43■■□□□ 1.02
MCF2L-221ENST00000469415 DDX46Q7L014 1031 aaKnown RBP21.43■■□□□ 1.02
MCF2L-221ENST00000469415 ZNF589Q86UQ0 364 aaPredicted RBP21.43■■□□□ 1.02
MCF2L-221ENST00000469415 ERC1Q8IUD2 1116 aa21.43■■□□□ 1.02
MCF2L-221ENST00000469415 TTC41PQ6P2S7 1318 aa21.43■■□□□ 1.02
MCF2L-221ENST00000469415 SNRPA1P09661 255 aaKnown RBP21.43■■□□□ 1.02
MCF2L-221ENST00000469415 EVI5LQ96CN4 794 aa21.43■■□□□ 1.02
MCF2L-221ENST00000469415 TTLL7Q6ZT98 887 aa21.42■■□□□ 1.02
MCF2L-221ENST00000469415 ZKSCAN1P17029 563 aaPredicted RBP21.42■■□□□ 1.02
MCF2L-221ENST00000469415 GJB2P29033 226 aa21.42■■□□□ 1.02
MCF2L-221ENST00000469415 MTX1Q13505 466 aa21.42■■□□□ 1.02
MCF2L-221ENST00000469415 LMBR1LQ6UX01 489 aa21.42■■□□□ 1.02
MCF2L-221ENST00000469415 LRRC2Q9BYS8 371 aa21.42■■□□□ 1.02
MCF2L-221ENST00000469415 CYP46A1Q9Y6A2 500 aa21.42■■□□□ 1.02
MCF2L-221ENST00000469415 CHD2O14647 1828 aaKnown RBP21.42■■□□□ 1.02
MCF2L-221ENST00000469415 METTL22Q9BUU2 404 aaPredicted RBP21.42■■□□□ 1.02
MCF2L-221ENST00000469415 PXDNLA1KZ92 1463 aa21.42■■□□□ 1.02
MCF2L-221ENST00000469415 DBNDD2Q9BQY9 259 aa21.41■■□□□ 1.02
MCF2L-221ENST00000469415 CREB3L3Q68CJ9 461 aa21.41■■□□□ 1.02
MCF2L-221ENST00000469415 ZNF594Q96JF6 807 aaPredicted RBP21.41■■□□□ 1.02
MCF2L-221ENST00000469415 KDM6AO15550 1401 aaPredicted RBP21.41■■□□□ 1.02
MCF2L-221ENST00000469415 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.4■■□□□ 1.02
MCF2L-221ENST00000469415 TTC14Q96N46 770 aa21.4■■□□□ 1.02
MCF2L-221ENST00000469415 FMNL2Q96PY5 1086 aa21.4■■□□□ 1.02
MCF2L-221ENST00000469415 STX6O43752 255 aa21.4■■□□□ 1.02
MCF2L-221ENST00000469415 INTS4Q96HW7 963 aaKnown RBP21.4■■□□□ 1.02
MCF2L-221ENST00000469415 NAP1L2Q9ULW6 460 aaPredicted RBP21.4■■□□□ 1.02
MCF2L-221ENST00000469415 CCDC171Q6TFL3 1326 aa21.4■■□□□ 1.02
MCF2L-221ENST00000469415 WDR33Q9C0J8 1336 aaKnown RBP21.4■■□□□ 1.02
MCF2L-221ENST00000469415 MEGF6O75095 1541 aa21.4■■□□□ 1.02
MCF2L-221ENST00000469415 TIMM10P62072 90 aa21.39■■□□□ 1.02
MCF2L-221ENST00000469415 ME3Q16798 604 aa21.39■■□□□ 1.02
MCF2L-221ENST00000469415 DBNLQ9UJU6 430 aaKnown RBP21.39■■□□□ 1.02
MCF2L-221ENST00000469415 ZNF445P59923 1031 aa21.39■■□□□ 1.01
MCF2L-221ENST00000469415 ISY1Q9ULR0 285 aaKnown RBP21.39■■□□□ 1.01
MCF2L-221ENST00000469415 DNM1Q05193 864 aaKnown RBP21.39■■□□□ 1.01
MCF2L-221ENST00000469415 VSIG10Q8N0Z9 540 aa21.38■■□□□ 1.01
MCF2L-221ENST00000469415 KAT6BQ8WYB5 2073 aa21.38■■□□□ 1.01
MCF2L-221ENST00000469415 DCAF5Q96JK2 942 aa21.37■■□□□ 1.01
MCF2L-221ENST00000469415 TPCN1Q9ULQ1 816 aa21.37■■□□□ 1.01
MCF2L-221ENST00000469415 HDAC5Q9UQL6 1122 aa21.37■■□□□ 1.01
MCF2L-221ENST00000469415 CCDC173Q0VFZ6 552 aa21.37■■□□□ 1.01
MCF2L-221ENST00000469415 SLC27A2O14975 620 aa21.36■■□□□ 1.01
MCF2L-221ENST00000469415 ZSCAN22P10073 491 aaPredicted RBP21.36■■□□□ 1.01
MCF2L-221ENST00000469415 PTPN12Q05209 780 aaKnown RBP21.36■■□□□ 1.01
MCF2L-221ENST00000469415 CLCN1P35523 988 aa21.36■■□□□ 1.01
MCF2L-221ENST00000469415 LRSAM1Q6UWE0 723 aa21.36■■□□□ 1.01
MCF2L-221ENST00000469415 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.36■■□□□ 1.01
MCF2L-221ENST00000469415 NBPF26B4DH59 902 aa21.35■■□□□ 1.01
MCF2L-221ENST00000469415 NBPF14Q5TI25 921 aa21.35■■□□□ 1.01
MCF2L-221ENST00000469415 NBPF10Q6P3W6 841 aaKnown RBP21.35■■□□□ 1.01
MCF2L-221ENST00000469415 NBPF15Q8N660 670 aa21.35■■□□□ 1.01
MCF2L-221ENST00000469415 HEG1Q9ULI3 1381 aa21.35■■□□□ 1.01
MCF2L-221ENST00000469415 FGD1P98174 961 aa21.35■■□□□ 1.01
MCF2L-221ENST00000469415 NECTIN1Q15223 517 aa21.35■■□□□ 1.01
MCF2L-221ENST00000469415 RPAP1Q9BWH6 1393 aaPredicted RBP21.35■■□□□ 1.01
MCF2L-221ENST00000469415 SNRKQ9NRH2 765 aa21.34■■□□□ 1.01
MCF2L-221ENST00000469415 MBD3O95983 291 aa21.34■■□□□ 1.01
MCF2L-221ENST00000469415 TNNI3KQ59H18 835 aa21.34■■□□□ 1.01
MCF2L-221ENST00000469415 DDX11Q96FC9 970 aa21.34■■□□□ 1.01
MCF2L-221ENST00000469415 TFIP11Q9UBB9 837 aaKnown RBP21.34■■□□□ 1.01
MCF2L-221ENST00000469415 FPGT-TNNI3KV9GXZ4 949 aa21.34■■□□□ 1.01
MCF2L-221ENST00000469415 MSNP26038 577 aaKnown RBP21.34■■□□□ 1.01
MCF2L-221ENST00000469415 BLOC1S2Q6QNY1 142 aa21.34■■□□□ 1.01
MCF2L-221ENST00000469415 GOLIM4O00461 696 aa21.33■■□□□ 1.01
MCF2L-221ENST00000469415 PTMAP06454 111 aaKnown RBP21.33■■□□□ 1.01
MCF2L-221ENST00000469415 LARP1BQ659C4 914 aaKnown RBP21.33■■□□□ 1.01
MCF2L-221ENST00000469415 HSP90B1P14625 803 aaKnown RBP21.33■■□□□ 1
MCF2L-221ENST00000469415 EVA1CP58658 441 aa21.33■■□□□ 1
MCF2L-221ENST00000469415 ST3GAL1Q11201 340 aa21.33■■□□□ 1
MCF2L-221ENST00000469415 RGPD5Q99666 1765 aa21.33■■□□□ 1
MCF2L-221ENST00000469415 CADPS2Q86UW7 1296 aa21.32■■□□□ 1
MCF2L-221ENST00000469415 F13A1P00488 732 aa21.32■■□□□ 1
MCF2L-221ENST00000469415 HSP90AB3PQ58FF7 597 aa21.32■■□□□ 1
MCF2L-221ENST00000469415 GIMAP6Q6P9H5 292 aa21.32■■□□□ 1
MCF2L-221ENST00000469415 CACNA1FO60840 1977 aa21.32■■□□□ 1
MCF2L-221ENST00000469415 LRRC24Q50LG9 513 aa21.31■■□□□ 1
MCF2L-221ENST00000469415 CHST3Q7LGC8 479 aa21.31■■□□□ 1
MCF2L-221ENST00000469415 ZSWIM6Q9HCJ5 1215 aa21.31■■□□□ 1
MCF2L-221ENST00000469415 ZCRB1Q8TBF4 217 aaKnown RBP21.31■■□□□ 1
MCF2L-221ENST00000469415 MAP4K1Q92918 833 aa21.31■■□□□ 1
MCF2L-221ENST00000469415 A0A0G2JLW4 131 aa21.31■■□□□ 1
MCF2L-221ENST00000469415 PUS3Q9BZE2 481 aaKnown RBP21.31■■□□□ 1
MCF2L-221ENST00000469415 TSPY26PQ9H489 355 aa21.31■■□□□ 1
MCF2L-221ENST00000469415 USP42Q9H9J4 1324 aaKnown RBP21.31■■□□□ 1
MCF2L-221ENST00000469415 MED1Q15648 1581 aaPredicted RBP21.3■■□□□ 1
MCF2L-221ENST00000469415 NCAPD2Q15021 1401 aa21.3■■□□□ 1
MCF2L-221ENST00000469415 CEBPZQ03701 1054 aaKnown RBP21.3■■□□□ 1
MCF2L-221ENST00000469415 SYTL4Q96C24 671 aaPredicted RBP21.3■■□□□ 1
MCF2L-221ENST00000469415 HCLS1P14317 486 aaPredicted RBP21.3■■□□□ 1
MCF2L-221ENST00000469415 CAMK4Q16566 473 aa21.3■■□□□ 1
MCF2L-221ENST00000469415 VPS53Q5VIR6 699 aa21.3■■□□□ 1
MCF2L-221ENST00000469415 CDC37L1Q7L3B6 337 aa21.29■■□□□ 1
MCF2L-221ENST00000469415 ZNF830Q96NB3 372 aaPredicted RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms