RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 AFAP1L1Q8TED9 768 aa15.29■□□□□ 0.04
USP40-208ENST00000450966 NUCKS1Q9H1E3 243 aaKnown RBP15.29■□□□□ 0.04
USP40-208ENST00000450966 KRT28Q7Z3Y7 464 aa15.28■□□□□ 0.04
USP40-208ENST00000450966 ABCC2Q92887 1545 aa15.28■□□□□ 0.04
USP40-208ENST00000450966 LACTBP83111 547 aaPredicted RBP15.28■□□□□ 0.04
USP40-208ENST00000450966 ZKSCAN8Q15776 578 aaPredicted RBP15.28■□□□□ 0.04
USP40-208ENST00000450966 DNAI1Q9UI46 699 aa15.28■□□□□ 0.04
USP40-208ENST00000450966 SLC12A5Q9H2X9 1139 aa15.28■□□□□ 0.04
USP40-208ENST00000450966 TTC21BQ7Z4L5 1316 aa15.28■□□□□ 0.04
USP40-208ENST00000450966 IDI1Q13907 227 aa15.28■□□□□ 0.04
USP40-208ENST00000450966 STX1AQ16623 288 aa15.28■□□□□ 0.04
USP40-208ENST00000450966 WWC2Q6AWC2 1192 aa15.28■□□□□ 0.04
USP40-208ENST00000450966 TCP11L2Q8N4U5 519 aa15.28■□□□□ 0.04
USP40-208ENST00000450966 CCDC160A6NGH7 325 aa15.27■□□□□ 0.04
USP40-208ENST00000450966 FAM177BA6PVY3 158 aa15.27■□□□□ 0.04
USP40-208ENST00000450966 SYCP1Q15431 976 aa15.27■□□□□ 0.04
USP40-208ENST00000450966 FAM200AQ8TCP9 573 aa15.27■□□□□ 0.04
USP40-208ENST00000450966 MPHOSPH8Q99549 860 aa15.27■□□□□ 0.04
USP40-208ENST00000450966 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.27■□□□□ 0.041e-7■■■■■ 123.5
USP40-208ENST00000450966 TMOD2Q9NZR1 351 aa15.27■□□□□ 0.04
USP40-208ENST00000450966 GNAT3A8MTJ3 354 aa15.27■□□□□ 0.03
USP40-208ENST00000450966 ZNF165P49910 485 aa15.27■□□□□ 0.03
USP40-208ENST00000450966 SURF6O75683 361 aaKnown RBP15.27■□□□□ 0.03
USP40-208ENST00000450966 ERCC3P19447 782 aa15.27■□□□□ 0.03
USP40-208ENST00000450966 CEBPZQ03701 1054 aaKnown RBP15.27■□□□□ 0.03
USP40-208ENST00000450966 TWISTNBQ3B726 338 aaPredicted RBP15.27■□□□□ 0.03
USP40-208ENST00000450966 TMC6Q7Z403 805 aa15.27■□□□□ 0.03
USP40-208ENST00000450966 MAATS1Q7Z4T9 603 aa15.26■□□□□ 0.03
USP40-208ENST00000450966 TTC21AQ8NDW8 1320 aa15.26■□□□□ 0.03
USP40-208ENST00000450966 BTBD11A6QL63 1104 aa15.26■□□□□ 0.03
USP40-208ENST00000450966 ZBTB17Q13105 803 aa15.26■□□□□ 0.03
USP40-208ENST00000450966 NAIPQ13075 1403 aa15.26■□□□□ 0.03
USP40-208ENST00000450966 ZC3H6P61129 1189 aaKnown RBP15.26■□□□□ 0.03
USP40-208ENST00000450966 ATP10BO94823 1461 aa15.26■□□□□ 0.03
USP40-208ENST00000450966 SNX21Q969T3 373 aa15.26■□□□□ 0.03
USP40-208ENST00000450966 MVPQ14764 893 aaKnown RBP15.25■□□□□ 0.03
USP40-208ENST00000450966 SPECC1Q5M775 1068 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 ZMAT2Q96NC0 199 aaKnown RBP15.25■□□□□ 0.03
USP40-208ENST00000450966 CCDC113Q9H0I3 377 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 STIM1Q13586 685 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 RAB3GAP1Q15042 981 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 NACAP1Q9BZK3 213 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 SLC8A1P32418 973 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 IGHMBP2P38935 993 aaKnown RBP15.25■□□□□ 0.03
USP40-208ENST00000450966 NEDD9Q14511 834 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 CCDC57Q2TAC2 916 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 ZNF365Q70YC5 407 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 PPFIBP2Q8ND30 876 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 SECISBP2LQ93073 1101 aaKnown RBP15.25■□□□□ 0.03
USP40-208ENST00000450966 PPP1R9BQ96SB3 815 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 GNAI2P04899 355 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 EHBP1Q8NDI1 1231 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 SRCIN1Q9C0H9 1055 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 MTMR7Q9Y216 660 aa15.25■□□□□ 0.03
USP40-208ENST00000450966 PCK1P35558 622 aa15.24■□□□□ 0.03
USP40-208ENST00000450966 CEBPAP49715 358 aaPredicted RBP15.24■□□□□ 0.03
USP40-208ENST00000450966 SPA17Q15506 151 aa15.24■□□□□ 0.03
USP40-208ENST00000450966 CEP128Q6ZU80 1094 aa15.24■□□□□ 0.03
USP40-208ENST00000450966 UHRF1BP1Q6BDS2 1440 aa15.24■□□□□ 0.03
USP40-208ENST00000450966 TTC39AQ5SRH9 613 aa15.24■□□□□ 0.03
USP40-208ENST00000450966 MCTP2Q6DN12 878 aa15.24■□□□□ 0.03
USP40-208ENST00000450966 SPATS2Q86XZ4 545 aaKnown RBP15.24■□□□□ 0.03
USP40-208ENST00000450966 CEP120Q8N960 986 aa15.24■□□□□ 0.03
USP40-208ENST00000450966 MX1P20591 662 aa15.24■□□□□ 0.03
USP40-208ENST00000450966 TMEM132AQ24JP5 1023 aa15.23■□□□□ 0.03
USP40-208ENST00000450966 MICAL1Q8TDZ2 1067 aa15.23■□□□□ 0.03
USP40-208ENST00000450966 ADAMTS8Q9UP79 889 aa15.23■□□□□ 0.03
USP40-208ENST00000450966 OAS2P29728 719 aaKnown RBP15.23■□□□□ 0.03
USP40-208ENST00000450966 ATP11AP98196 1134 aa15.23■□□□□ 0.03
USP40-208ENST00000450966 TSNAXIP1Q2TAA8 658 aa15.23■□□□□ 0.03
USP40-208ENST00000450966 EFCAB13Q8IY85 973 aa15.23■□□□□ 0.03
USP40-208ENST00000450966 CDK5RAP3Q96JB5 506 aa15.23■□□□□ 0.03
USP40-208ENST00000450966 RRP15Q9Y3B9 282 aaKnown RBP15.23■□□□□ 0.03
USP40-208ENST00000450966 ADAMTS2O95450 1211 aa15.23■□□□□ 0.03
USP40-208ENST00000450966 BIRC2Q13490 618 aa15.23■□□□□ 0.03
USP40-208ENST00000450966 FBXO31Q5XUX0 539 aaPredicted RBP15.23■□□□□ 0.03
USP40-208ENST00000450966 GPATCH8Q9UKJ3 1502 aaKnown RBP15.22■□□□□ 0.03
USP40-208ENST00000450966 BCAR3O75815 825 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 ZFYVE27Q5T4F4 411 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 IFT74Q96LB3 600 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 NAP1L3Q99457 506 aaPredicted RBP15.22■□□□□ 0.03
USP40-208ENST00000450966 C14orf93Q9H972 538 aaKnown RBP15.22■□□□□ 0.03
USP40-208ENST00000450966 ABCC11Q96J66 1382 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 LRRC23Q53EV4 343 aaPredicted RBP15.22■□□□□ 0.03
USP40-208ENST00000450966 CEP85LQ5SZL2 805 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 EIF4G3O43432 1585 aaKnown RBP15.22■□□□□ 0.03
USP40-208ENST00000450966 USO1O60763 962 aaKnown RBP15.22■□□□□ 0.03
USP40-208ENST00000450966 KDM4AO75164 1064 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 KLHL10Q6JEL2 608 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 NUP160Q12769 1436 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 KIAA0556O60303 1618 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 ANKRD18BA2A2Z9 1011 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 NDUFAB1O14561 156 aa15.22■□□□□ 0.03
USP40-208ENST00000450966 LUC7L3O95232 432 aaKnown RBP15.22■□□□□ 0.03
USP40-208ENST00000450966 ZSWIM4Q9H7M6 989 aa15.21■□□□□ 0.03
USP40-208ENST00000450966 ZNF445P59923 1031 aa15.21■□□□□ 0.03
USP40-208ENST00000450966 CACNA2D3Q8IZS8 1091 aa15.21■□□□□ 0.03
USP40-208ENST00000450966 NCAPGQ9BPX3 1015 aa15.21■□□□□ 0.03
USP40-208ENST00000450966 SCAF11Q99590 1463 aaKnown RBP15.21■□□□□ 0.03
USP40-208ENST00000450966 SMC5Q8IY18 1101 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms