RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 PCCAP05165 728 aaPredicted RBP17.57■□□□□ 0.4
USP39-207ENST00000450066 COPRSQ9NQ92 184 aa17.57■□□□□ 0.4
USP39-207ENST00000450066 SBF2Q86WG5 1849 aa17.56■□□□□ 0.4
USP39-207ENST00000450066 RFX5P48382 616 aaPredicted RBP17.56■□□□□ 0.4
USP39-207ENST00000450066 G3BP1Q13283 466 aaKnown RBP eCLIP17.56■□□□□ 0.4
USP39-207ENST00000450066 NLRP10Q86W26 655 aa17.56■□□□□ 0.4
USP39-207ENST00000450066 ZBTB38Q8NAP3 1195 aaPredicted RBP17.56■□□□□ 0.4
USP39-207ENST00000450066 LINC00116Q8NCU8 138 aa17.56■□□□□ 0.4
USP39-207ENST00000450066 ZNF772Q68DY9 489 aaPredicted RBP17.56■□□□□ 0.4
USP39-207ENST00000450066 LMBR1LQ6UX01 489 aa17.56■□□□□ 0.4
USP39-207ENST00000450066 UPF2Q9HAU5 1272 aaKnown RBP17.56■□□□□ 0.4
USP39-207ENST00000450066 AOX1Q06278 1338 aa17.55■□□□□ 0.4
USP39-207ENST00000450066 CNTNAP4Q9C0A0 1308 aa17.55■□□□□ 0.4
USP39-207ENST00000450066 ANKRD36CQ5JPF3 1778 aa17.55■□□□□ 0.4
USP39-207ENST00000450066 RTL5Q5HYW3 569 aaPredicted RBP17.55■□□□□ 0.4
USP39-207ENST00000450066 NUP98P52948 1817 aa17.54■□□□□ 0.4
USP39-207ENST00000450066 CLASRPQ8N2M8 674 aaKnown RBP17.54■□□□□ 0.4
USP39-207ENST00000450066 BCL11BQ9C0K0 894 aaPredicted RBP17.54■□□□□ 0.4
USP39-207ENST00000450066 PTPN12Q05209 780 aaKnown RBP17.54■□□□□ 0.4
USP39-207ENST00000450066 RC3H1Q5TC82 1133 aaKnown RBP17.54■□□□□ 0.4
USP39-207ENST00000450066 ZNF34Q8IZ26 560 aa17.54■□□□□ 0.4
USP39-207ENST00000450066 PLA2G12BQ9BX93 195 aa17.54■□□□□ 0.4
USP39-207ENST00000450066 CDHR2Q9BYE9 1310 aa17.53■□□□□ 0.4
USP39-207ENST00000450066 CDC45O75419 566 aa17.53■□□□□ 0.4
USP39-207ENST00000450066 SASH1O94885 1247 aa17.53■□□□□ 0.4
USP39-207ENST00000450066 CAMTA2O94983 1202 aa17.53■□□□□ 0.4
USP39-207ENST00000450066 GPTP24298 496 aa17.53■□□□□ 0.4
USP39-207ENST00000450066 SDSP20132 328 aa17.52■□□□□ 0.4
USP39-207ENST00000450066 RBM6P78332 1123 aaKnown RBP17.52■□□□□ 0.4
USP39-207ENST00000450066 FAM196AQ6ZSG2 479 aa17.52■□□□□ 0.4
USP39-207ENST00000450066 TBC1D9Q6ZT07 1266 aa17.52■□□□□ 0.4
USP39-207ENST00000450066 KRT27Q7Z3Y8 459 aa17.52■□□□□ 0.4
USP39-207ENST00000450066 NUTM1Q86Y26 1132 aa17.52■□□□□ 0.4
USP39-207ENST00000450066 KLHDC4Q8TBB5 520 aa17.52■□□□□ 0.4
USP39-207ENST00000450066 FAM89AQ96GI7 184 aa17.52■□□□□ 0.4
USP39-207ENST00000450066 SIL1Q9H173 461 aa17.52■□□□□ 0.4
USP39-207ENST00000450066 EP400Q96L91 3159 aa17.52■□□□□ 0.4
USP39-207ENST00000450066 CCNL1Q9UK58 526 aaPredicted RBP17.52■□□□□ 0.39
USP39-207ENST00000450066 USP42Q9H9J4 1324 aaKnown RBP17.51■□□□□ 0.39
USP39-207ENST00000450066 LY75O60449 1722 aa17.51■□□□□ 0.39
USP39-207ENST00000450066 KCNQ4P56696 695 aa17.51■□□□□ 0.39
USP39-207ENST00000450066 TSHZ3Q63HK5 1081 aa17.51■□□□□ 0.39
USP39-207ENST00000450066 IPO9Q96P70 1041 aaKnown RBP17.51■□□□□ 0.39
USP39-207ENST00000450066 CHMP3Q9Y3E7 222 aa17.51■□□□□ 0.39
USP39-207ENST00000450066 UBN2Q6ZU65 1347 aa17.5■□□□□ 0.39
USP39-207ENST00000450066 RGL2O15211 777 aa17.5■□□□□ 0.39
USP39-207ENST00000450066 EIF5BO60841 1220 aaKnown RBP17.5■□□□□ 0.39
USP39-207ENST00000450066 TRMT112Q9UI30 125 aaKnown RBP17.5■□□□□ 0.39
USP39-207ENST00000450066 BRWD3Q6RI45 1802 aa17.5■□□□□ 0.39
USP39-207ENST00000450066 TTC41PQ6P2S7 1318 aa17.5■□□□□ 0.39
USP39-207ENST00000450066 CLEC4GQ6UXB4 293 aa17.49■□□□□ 0.39
USP39-207ENST00000450066 TBC1D32Q96NH3 1257 aa17.49■□□□□ 0.39
USP39-207ENST00000450066 ZNF652Q9Y2D9 606 aa17.49■□□□□ 0.39
USP39-207ENST00000450066 CSF1RP07333 972 aa17.49■□□□□ 0.39
USP39-207ENST00000450066 IFIT2P09913 472 aaKnown RBP17.49■□□□□ 0.39
USP39-207ENST00000450066 MFAP1P55081 439 aaKnown RBP17.49■□□□□ 0.39
USP39-207ENST00000450066 PARP10Q53GL7 1025 aa17.49■□□□□ 0.39
USP39-207ENST00000450066 RPS6KA4O75676 772 aa17.48■□□□□ 0.39
USP39-207ENST00000450066 AACSQ86V21 672 aa17.48■□□□□ 0.39
USP39-207ENST00000450066 PI4K2BQ8TCG2 481 aa17.48■□□□□ 0.39
USP39-207ENST00000450066 TUBGCP6Q96RT7 1819 aa17.48■□□□□ 0.39
USP39-207ENST00000450066 CASC1Q6TDU7 716 aa17.48■□□□□ 0.39
USP39-207ENST00000450066 GPATCH3Q96I76 525 aa17.48■□□□□ 0.39
USP39-207ENST00000450066 AK7Q96M32 723 aa17.48■□□□□ 0.39
USP39-207ENST00000450066 BCORQ6W2J9 1755 aa17.47■□□□□ 0.39
USP39-207ENST00000450066 IRS4O14654 1257 aaPredicted RBP17.47■□□□□ 0.39
USP39-207ENST00000450066 CCDC57Q2TAC2 916 aa17.47■□□□□ 0.39
USP39-207ENST00000450066 SYNE4Q8N205 404 aa17.47■□□□□ 0.39
USP39-207ENST00000450066 EAF2Q96CJ1 260 aaPredicted RBP17.47■□□□□ 0.39
USP39-207ENST00000450066 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.47■□□□□ 0.39
USP39-207ENST00000450066 DDRGK1Q96HY6 314 aa17.46■□□□□ 0.39
USP39-207ENST00000450066 ECHDC1Q9NTX5 307 aa17.46■□□□□ 0.39
USP39-207ENST00000450066 ERC2O15083 957 aa17.46■□□□□ 0.39
USP39-207ENST00000450066 GLRX3O76003 335 aaKnown RBP17.46■□□□□ 0.39
USP39-207ENST00000450066 CIAO1O76071 339 aa17.46■□□□□ 0.39
USP39-207ENST00000450066 SUSD4Q5VX71 490 aa17.46■□□□□ 0.39
USP39-207ENST00000450066 UTP14AQ9BVJ6 771 aaKnown RBP17.46■□□□□ 0.39
USP39-207ENST00000450066 C22orf23Q9BZE7 217 aa17.46■□□□□ 0.39
USP39-207ENST00000450066 FBXO3Q9UK99 471 aa17.46■□□□□ 0.39
USP39-207ENST00000450066 TAF1LQ8IZX4 1826 aa17.45■□□□□ 0.38
USP39-207ENST00000450066 GNPATO15228 680 aa17.45■□□□□ 0.38
USP39-207ENST00000450066 PDE8AO60658 829 aa17.45■□□□□ 0.38
USP39-207ENST00000450066 IL15P40933 162 aaPredicted RBP17.45■□□□□ 0.38
USP39-207ENST00000450066 CTSWP56202 376 aa17.45■□□□□ 0.38
USP39-207ENST00000450066 TFCP2Q12800 502 aa17.45■□□□□ 0.38
USP39-207ENST00000450066 ATG9AQ7Z3C6 839 aa17.45■□□□□ 0.38
USP39-207ENST00000450066 TTLL11Q8NHH1 800 aa17.45■□□□□ 0.38
USP39-207ENST00000450066 NIP7Q9Y221 180 aaKnown RBP eCLIP17.45■□□□□ 0.38
USP39-207ENST00000450066 SH3TC1Q8TE82 1336 aa17.45■□□□□ 0.38
USP39-207ENST00000450066 TRIM6-TRIM34B2RNG4 842 aa17.44■□□□□ 0.38
USP39-207ENST00000450066 EYA2O00167 538 aa17.44■□□□□ 0.38
USP39-207ENST00000450066 RTCBQ9Y3I0 505 aaKnown RBP17.44■□□□□ 0.38
USP39-207ENST00000450066 IFIT5Q13325 482 aaKnown RBP17.44■□□□□ 0.38
USP39-207ENST00000450066 TNNI3KQ59H18 835 aa17.44■□□□□ 0.38
USP39-207ENST00000450066 NARFQ9UHQ1 456 aa17.44■□□□□ 0.38
USP39-207ENST00000450066 FPGT-TNNI3KV9GXZ4 949 aa17.44■□□□□ 0.38
USP39-207ENST00000450066 TRIM37O94972 964 aa17.43■□□□□ 0.38
USP39-207ENST00000450066 SLC27A3Q5K4L6 730 aa17.43■□□□□ 0.38
USP39-207ENST00000450066 C4BP0C0L5 1744 aa17.43■□□□□ 0.38
USP39-207ENST00000450066 SCN7AQ01118 1682 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms