RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 BCL2L12Q9HB09 334 aa24.16■■□□□ 1.46
RPS28-202ENST00000449223 UBN2Q6ZU65 1347 aa24.15■■□□□ 1.46
RPS28-202ENST00000449223 ZPR1O75312 459 aa24.15■■□□□ 1.46
RPS28-202ENST00000449223 RFC4P35249 363 aa24.15■■□□□ 1.46
RPS28-202ENST00000449223 PARP10Q53GL7 1025 aa24.15■■□□□ 1.46
RPS28-202ENST00000449223 SIRT2Q8IXJ6 389 aa24.15■■□□□ 1.46
RPS28-202ENST00000449223 FLAD1Q8NFF5 587 aa24.15■■□□□ 1.46
RPS28-202ENST00000449223 RWDD1Q9H446 243 aaPredicted RBP24.15■■□□□ 1.46
RPS28-202ENST00000449223 LRRFIP2Q9Y608 721 aaKnown RBP24.15■■□□□ 1.46
RPS28-202ENST00000449223 PCCAP05165 728 aaPredicted RBP24.14■■□□□ 1.45
RPS28-202ENST00000449223 MTX1Q13505 466 aa24.14■■□□□ 1.45
RPS28-202ENST00000449223 SMIM5Q71RC9 77 aa24.14■■□□□ 1.45
RPS28-202ENST00000449223 USPL1Q5W0Q7 1092 aa24.13■■□□□ 1.45
RPS28-202ENST00000449223 CENPQQ7L2Z9 268 aaPredicted RBP24.13■■□□□ 1.45
RPS28-202ENST00000449223 ZBTB38Q8NAP3 1195 aaPredicted RBP24.13■■□□□ 1.45
RPS28-202ENST00000449223 KAZALD1Q96I82 304 aa24.13■■□□□ 1.45
RPS28-202ENST00000449223 PHF14O94880 888 aa24.12■■□□□ 1.45
RPS28-202ENST00000449223 IGHDP01880 384 aa24.12■■□□□ 1.45
RPS28-202ENST00000449223 UBE3BQ7Z3V4 1068 aa24.12■■□□□ 1.45
RPS28-202ENST00000449223 SRP68Q9UHB9 627 aaKnown RBP24.12■■□□□ 1.45
RPS28-202ENST00000449223 LAMB2P55268 1798 aa24.11■■□□□ 1.45
RPS28-202ENST00000449223 GPTP24298 496 aa24.11■■□□□ 1.45
RPS28-202ENST00000449223 DEFB132Q7Z7B7 95 aa24.11■■□□□ 1.45
RPS28-202ENST00000449223 SUCLG2Q96I99 432 aa24.11■■□□□ 1.45
RPS28-202ENST00000449223 TFCP2L1Q9NZI6 479 aa24.11■■□□□ 1.45
RPS28-202ENST00000449223 CDHR2Q9BYE9 1310 aa24.11■■□□□ 1.45
RPS28-202ENST00000449223 NIP7Q9Y221 180 aaKnown RBP eCLIP24.1■■□□□ 1.45
RPS28-202ENST00000449223 ATP8B2P98198 1209 aa24.1■■□□□ 1.45
RPS28-202ENST00000449223 PLA2G12BQ9BX93 195 aa24.1■■□□□ 1.45
RPS28-202ENST00000449223 SLC15A2Q16348 729 aa24.09■■□□□ 1.45
RPS28-202ENST00000449223 RABL6Q3YEC7 729 aaPredicted RBP24.09■■□□□ 1.45
RPS28-202ENST00000449223 ANO8Q9HCE9 1232 aaPredicted RBP24.09■■□□□ 1.45
RPS28-202ENST00000449223 MYH3P11055 1940 aa24.08■■□□□ 1.45
RPS28-202ENST00000449223 GYS1P13807 737 aa24.08■■□□□ 1.45
RPS28-202ENST00000449223 PNPLA7Q6ZV29 1317 aa24.07■■□□□ 1.44
RPS28-202ENST00000449223 HMMRO75330 724 aa24.07■■□□□ 1.44
RPS28-202ENST00000449223 POLA2Q14181 598 aa24.07■■□□□ 1.44
RPS28-202ENST00000449223 TBC1D9BQ66K14 1250 aa24.07■■□□□ 1.44
RPS28-202ENST00000449223 PPP1R42Q7Z4L9 355 aa24.07■■□□□ 1.44
RPS28-202ENST00000449223 SMC5Q8IY18 1101 aa24.07■■□□□ 1.44
RPS28-202ENST00000449223 SSH3Q8TE77 659 aa24.07■■□□□ 1.44
RPS28-202ENST00000449223 DDX60Q8IY21 1712 aaKnown RBP24.06■■□□□ 1.44
RPS28-202ENST00000449223 NTSR2O95665 410 aa24.06■■□□□ 1.44
RPS28-202ENST00000449223 SUSD4Q5VX71 490 aa24.06■■□□□ 1.44
RPS28-202ENST00000449223 UPF1Q92900 1129 aaKnown RBP eCLIP24.06■■□□□ 1.44
RPS28-202ENST00000449223 BICC1Q9H694 974 aaKnown RBP24.06■■□□□ 1.44
RPS28-202ENST00000449223 PNMA6EA0A0J9YXQ4 647 aa24.05■■□□□ 1.44
RPS28-202ENST00000449223 COL23A1Q86Y22 540 aaPredicted RBP24.05■■□□□ 1.44
RPS28-202ENST00000449223 UTP14AQ9BVJ6 771 aaKnown RBP24.05■■□□□ 1.44
RPS28-202ENST00000449223 STK32BQ9NY57 414 aa24.05■■□□□ 1.44
RPS28-202ENST00000449223 TRMT112Q9UI30 125 aaKnown RBP24.05■■□□□ 1.44
RPS28-202ENST00000449223 SH3TC1Q8TE82 1336 aa24.05■■□□□ 1.44
RPS28-202ENST00000449223 FOXO4P98177 505 aa24.05■■□□□ 1.44
RPS28-202ENST00000449223 EPHA10Q5JZY3 1008 aa24.05■■□□□ 1.44
RPS28-202ENST00000449223 GCC1Q96CN9 775 aa24.05■■□□□ 1.44
RPS28-202ENST00000449223 FAM89AQ96GI7 184 aa24.05■■□□□ 1.44
RPS28-202ENST00000449223 CARMIL3Q8ND23 1372 aa24.04■■□□□ 1.44
RPS28-202ENST00000449223 SETDB2Q96T68 719 aa24.04■■□□□ 1.44
RPS28-202ENST00000449223 DCTPP1Q9H773 170 aa24.04■■□□□ 1.44
RPS28-202ENST00000449223 SRGAP3O43295 1099 aa24.02■■□□□ 1.44
RPS28-202ENST00000449223 JARID2Q92833 1246 aaPredicted RBP24.02■■□□□ 1.44
RPS28-202ENST00000449223 NYXQ9GZU5 481 aa24.02■■□□□ 1.44
RPS28-202ENST00000449223 HSP90B1P14625 803 aaKnown RBP24.01■■□□□ 1.43
RPS28-202ENST00000449223 NFIXQ14938 502 aa24.01■■□□□ 1.43
RPS28-202ENST00000449223 TM4SF1P30408 202 aa24■■□□□ 1.43
RPS28-202ENST00000449223 NRXN2Q9P2S2 1712 aa24■■□□□ 1.43
RPS28-202ENST00000449223 RIC1Q4ADV7 1423 aa24■■□□□ 1.43
RPS28-202ENST00000449223 IRS4O14654 1257 aaPredicted RBP24■■□□□ 1.43
RPS28-202ENST00000449223 CSF1RP07333 972 aa24■■□□□ 1.43
RPS28-202ENST00000449223 RTL5Q5HYW3 569 aaPredicted RBP24■■□□□ 1.43
RPS28-202ENST00000449223 NLGN1Q8N2Q7 840 aa24■■□□□ 1.43
RPS28-202ENST00000449223 SYNE4Q8N205 404 aa23.99■■□□□ 1.43
RPS28-202ENST00000449223 CASZ1Q86V15 1759 aa23.99■■□□□ 1.43
RPS28-202ENST00000449223 PDE8AO60658 829 aa23.98■■□□□ 1.43
RPS28-202ENST00000449223 SLC10A5Q5PT55 438 aa23.98■■□□□ 1.43
RPS28-202ENST00000449223 LMBR1LQ6UX01 489 aa23.98■■□□□ 1.43
RPS28-202ENST00000449223 NOP58Q9Y2X3 529 aaKnown RBP23.98■■□□□ 1.43
RPS28-202ENST00000449223 TPTE2Q6XPS3 522 aa23.97■■□□□ 1.43
RPS28-202ENST00000449223 BICDL1Q6ZP65 573 aa23.97■■□□□ 1.43
RPS28-202ENST00000449223 RFX5P48382 616 aaPredicted RBP23.96■■□□□ 1.43
RPS28-202ENST00000449223 CTSWP56202 376 aa23.96■■□□□ 1.43
RPS28-202ENST00000449223 NBPF5PQ86XG9 351 aaPredicted RBP23.96■■□□□ 1.43
RPS28-202ENST00000449223 RTL9Q8NET4 1388 aa23.96■■□□□ 1.43
RPS28-202ENST00000449223 TTLL11Q8NHH1 800 aa23.94■■□□□ 1.42
RPS28-202ENST00000449223 COPRSQ9NQ92 184 aa23.94■■□□□ 1.42
RPS28-202ENST00000449223 POLRMTO00411 1230 aaKnown RBP23.94■■□□□ 1.42
RPS28-202ENST00000449223 NUCB1Q02818 461 aa23.94■■□□□ 1.42
RPS28-202ENST00000449223 ERFEQ4G0M1 354 aa23.94■■□□□ 1.42
RPS28-202ENST00000449223 NUTM1Q86Y26 1132 aa23.94■■□□□ 1.42
RPS28-202ENST00000449223 ABCC12Q96J65 1359 aa23.93■■□□□ 1.42
RPS28-202ENST00000449223 FAM177BA6PVY3 158 aa23.93■■□□□ 1.42
RPS28-202ENST00000449223 DDR1Q08345 913 aa23.93■■□□□ 1.42
RPS28-202ENST00000449223 HSP90AB4PQ58FF6 505 aa23.93■■□□□ 1.42
RPS28-202ENST00000449223 LRP5O75197 1615 aa23.92■■□□□ 1.42
RPS28-202ENST00000449223 MSH5O43196 834 aa23.92■■□□□ 1.42
RPS28-202ENST00000449223 PTPN12Q05209 780 aaKnown RBP23.92■■□□□ 1.42
RPS28-202ENST00000449223 RAB11FIP3O75154 756 aa23.91■■□□□ 1.42
RPS28-202ENST00000449223 HCLS1P14317 486 aaPredicted RBP23.91■■□□□ 1.42
RPS28-202ENST00000449223 CNBD1Q8NA66 436 aa23.91■■□□□ 1.42
RPS28-202ENST00000449223 SLC16A10Q8TF71 515 aa23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms