RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 NTSR2O95665 410 aa13.44□□□□□ -0.26
MCF2L-216ENST00000439475 C9orf131Q5VYM1 1079 aa13.44□□□□□ -0.26
MCF2L-216ENST00000439475 DIEXFQ68CQ4 756 aaKnown RBP13.44□□□□□ -0.26
MCF2L-216ENST00000439475 PHAXQ9H814 394 aaKnown RBP13.44□□□□□ -0.26
MCF2L-216ENST00000439475 SH3TC1Q8TE82 1336 aa13.43□□□□□ -0.26
MCF2L-216ENST00000439475 FANCIQ9NVI1 1328 aa13.43□□□□□ -0.26
MCF2L-216ENST00000439475 HSP90B1P14625 803 aaKnown RBP13.43□□□□□ -0.26
MCF2L-216ENST00000439475 LMNB1P20700 586 aa13.43□□□□□ -0.26
MCF2L-216ENST00000439475 TRIM28Q13263 835 aaKnown RBP13.43□□□□□ -0.26
MCF2L-216ENST00000439475 PRPF40BQ6NWY9 871 aaKnown RBP13.43□□□□□ -0.26
MCF2L-216ENST00000439475 ISCA1Q9BUE6 129 aa13.43□□□□□ -0.26
MCF2L-216ENST00000439475 RNF181Q9P0P0 153 aa13.43□□□□□ -0.26
MCF2L-216ENST00000439475 RIC1Q4ADV7 1423 aa13.42□□□□□ -0.26
MCF2L-216ENST00000439475 SLC4A2P04920 1241 aa13.42□□□□□ -0.26
MCF2L-216ENST00000439475 EXOSC9Q06265 439 aaKnown RBP13.42□□□□□ -0.26
MCF2L-216ENST00000439475 CRY2Q49AN0 593 aa13.42□□□□□ -0.26
MCF2L-216ENST00000439475 CCDC93Q567U6 631 aa13.42□□□□□ -0.26
MCF2L-216ENST00000439475 CC2D2BQ6DHV5 1058 aa13.42□□□□□ -0.26
MCF2L-216ENST00000439475 ATP5J2-PTCD1G3V325 749 aa13.41□□□□□ -0.26
MCF2L-216ENST00000439475 VAMP4O75379 141 aa13.41□□□□□ -0.26
MCF2L-216ENST00000439475 HOXA10P31260 410 aaPredicted RBP13.41□□□□□ -0.26
MCF2L-216ENST00000439475 NEXNQ0ZGT2 675 aa13.41□□□□□ -0.26
MCF2L-216ENST00000439475 GRIPAP1Q4V328 841 aa13.41□□□□□ -0.26
MCF2L-216ENST00000439475 KSR2Q6VAB6 950 aa13.41□□□□□ -0.26
MCF2L-216ENST00000439475 RTKN2Q8IZC4 609 aa13.41□□□□□ -0.26
MCF2L-216ENST00000439475 ZNF526Q8TF50 670 aaPredicted RBP13.41□□□□□ -0.26
MCF2L-216ENST00000439475 CRAMP1Q96RY5 1269 aa13.41□□□□□ -0.26
MCF2L-216ENST00000439475 MYD88Q99836 296 aa13.41□□□□□ -0.26
MCF2L-216ENST00000439475 TAOK3Q9H2K8 898 aa13.41□□□□□ -0.26
MCF2L-216ENST00000439475 ZC3H4Q9UPT8 1303 aaKnown RBP13.4□□□□□ -0.26
MCF2L-216ENST00000439475 ANKRD36CQ5JPF3 1778 aa13.4□□□□□ -0.26
MCF2L-216ENST00000439475 TCERG1O14776 1098 aaKnown RBP13.4□□□□□ -0.26
MCF2L-216ENST00000439475 RASSF7Q02833 373 aa13.4□□□□□ -0.26
MCF2L-216ENST00000439475 CCDC191Q8NCU4 936 aa13.4□□□□□ -0.26
MCF2L-216ENST00000439475 METTL22Q9BUU2 404 aaPredicted RBP13.4□□□□□ -0.26
MCF2L-216ENST00000439475 ADCY9O60503 1353 aa13.4□□□□□ -0.26
MCF2L-216ENST00000439475 ABCC12Q96J65 1359 aa13.4□□□□□ -0.26
MCF2L-216ENST00000439475 CACNA1FO60840 1977 aa13.4□□□□□ -0.27
MCF2L-216ENST00000439475 KDM2BQ8NHM5 1336 aa13.39□□□□□ -0.27
MCF2L-216ENST00000439475 SLX4Q8IY92 1834 aa13.39□□□□□ -0.27
MCF2L-216ENST00000439475 E9PSI1 815 aa13.39□□□□□ -0.27
MCF2L-216ENST00000439475 NFKBIEO00221 500 aa13.39□□□□□ -0.27
MCF2L-216ENST00000439475 DPY19L2Q6NUT2 758 aa13.39□□□□□ -0.27
MCF2L-216ENST00000439475 DDX46Q7L014 1031 aaKnown RBP13.39□□□□□ -0.27
MCF2L-216ENST00000439475 C7orf43Q8WVR3 580 aa13.39□□□□□ -0.27
MCF2L-216ENST00000439475 MAP3K2Q9Y2U5 619 aa13.39□□□□□ -0.27
MCF2L-216ENST00000439475 COL11A2P13942 1736 aaPredicted RBP13.39□□□□□ -0.27
MCF2L-216ENST00000439475 LTBP3Q9NS15 1303 aa13.39□□□□□ -0.27
MCF2L-216ENST00000439475 SBF1O95248 1867 aa13.38□□□□□ -0.27
MCF2L-216ENST00000439475 CACNA1SQ13698 1873 aa13.38□□□□□ -0.27
MCF2L-216ENST00000439475 PI4KAP2A4QPH2 592 aa13.38□□□□□ -0.27
MCF2L-216ENST00000439475 BBOX1O75936 387 aa13.38□□□□□ -0.27
MCF2L-216ENST00000439475 HCLS1P14317 486 aaPredicted RBP13.38□□□□□ -0.27
MCF2L-216ENST00000439475 PI4KAP1Q8N8J0 262 aa13.38□□□□□ -0.27
MCF2L-216ENST00000439475 ZBTB38Q8NAP3 1195 aaPredicted RBP13.38□□□□□ -0.27
MCF2L-216ENST00000439475 FAM89AQ96GI7 184 aa13.38□□□□□ -0.27
MCF2L-216ENST00000439475 SPINK5Q9NQ38 1064 aaPredicted RBP13.38□□□□□ -0.27
MCF2L-216ENST00000439475 CWC25Q9NXE8 425 aaPredicted RBP13.38□□□□□ -0.27
MCF2L-216ENST00000439475 ARFGEF2Q9Y6D5 1785 aa13.37□□□□□ -0.27
MCF2L-216ENST00000439475 FKBP4Q02790 459 aaKnown RBP eCLIP13.37□□□□□ -0.272e-6■□□□□ 10.6
MCF2L-216ENST00000439475 FLIIQ13045 1269 aa13.37□□□□□ -0.27
MCF2L-216ENST00000439475 FKBP5Q13451 457 aaPredicted RBP13.37□□□□□ -0.27
MCF2L-216ENST00000439475 CCDC88AQ3V6T2 1871 aa13.37□□□□□ -0.27
MCF2L-216ENST00000439475 ZNF521Q96K83 1311 aa13.37□□□□□ -0.27
MCF2L-216ENST00000439475 IRS4O14654 1257 aaPredicted RBP13.36□□□□□ -0.27
MCF2L-216ENST00000439475 PPEF1O14829 653 aaPredicted RBP13.36□□□□□ -0.27
MCF2L-216ENST00000439475 PCCAP05165 728 aaPredicted RBP13.36□□□□□ -0.27
MCF2L-216ENST00000439475 SF3B3Q15393 1217 aaKnown RBP13.36□□□□□ -0.27
MCF2L-216ENST00000439475 RTL5Q5HYW3 569 aaPredicted RBP13.36□□□□□ -0.27
MCF2L-216ENST00000439475 TMC4Q7Z404 712 aa13.36□□□□□ -0.27
MCF2L-216ENST00000439475 FER1L6Q2WGJ9 1857 aa13.36□□□□□ -0.27
MCF2L-216ENST00000439475 C1QTNF8P60827 252 aa13.35□□□□□ -0.27
MCF2L-216ENST00000439475 G2E3Q7L622 706 aa13.35□□□□□ -0.27
MCF2L-216ENST00000439475 C16orf71Q8IYS4 520 aaPredicted RBP13.35□□□□□ -0.27
MCF2L-216ENST00000439475 SYNE4Q8N205 404 aa13.35□□□□□ -0.27
MCF2L-216ENST00000439475 DNAAF4Q8WXU2 420 aa13.35□□□□□ -0.27
MCF2L-216ENST00000439475 GLTPD2A6NH11 291 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 PDE8AO60658 829 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 SLFN5Q08AF3 891 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 GRAPQ13588 217 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 C3orf67Q6ZVT6 689 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 SP8Q8IXZ3 490 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 MIER1Q8N108 512 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 SUPT20HQ8NEM7 779 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 GRAPLQ8TC17 118 aaPredicted RBP13.34□□□□□ -0.27
MCF2L-216ENST00000439475 ZNF428Q96B54 188 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 PSMD1Q99460 953 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 ATP6V0A2Q9Y487 856 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 ABCC4O15439 1325 aa13.34□□□□□ -0.27
MCF2L-216ENST00000439475 TNRC6CQ9HCJ0 1690 aaKnown RBP13.34□□□□□ -0.27
MCF2L-216ENST00000439475 IARSP41252 1262 aaKnown RBP13.33□□□□□ -0.28
MCF2L-216ENST00000439475 CCDC152Q4G0S7 254 aa13.33□□□□□ -0.28
MCF2L-216ENST00000439475 JDP2Q8WYK2 163 aa13.33□□□□□ -0.28
MCF2L-216ENST00000439475 VPS33BQ9H267 617 aa13.33□□□□□ -0.28
MCF2L-216ENST00000439475 NEURL1BA8MQ27 555 aa13.32□□□□□ -0.28
MCF2L-216ENST00000439475 PRELPP51888 382 aa13.32□□□□□ -0.28
MCF2L-216ENST00000439475 LINS1Q8NG48 757 aa13.32□□□□□ -0.28
MCF2L-216ENST00000439475 RRAGCQ9HB90 399 aa13.32□□□□□ -0.28
MCF2L-216ENST00000439475 DICER1Q9UPY3 1922 aaKnown RBP13.32□□□□□ -0.28
MCF2L-216ENST00000439475 CDHR2Q9BYE9 1310 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms