RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 ALDH1B1P30837 517 aa31.84■■■□□ 2.69
RAPGEF1-206ENST00000438647 MYH16Q9H6N6 1097 aa31.84■■■□□ 2.69
RAPGEF1-206ENST00000438647 RIC3Q7Z5B4 369 aa31.83■■■□□ 2.69
RAPGEF1-206ENST00000438647 PHAXQ9H814 394 aaKnown RBP31.83■■■□□ 2.69
RAPGEF1-206ENST00000438647 DDX58O95786 925 aaKnown RBP31.82■■■□□ 2.68
RAPGEF1-206ENST00000438647 RPGRQ92834 1020 aaKnown RBP31.82■■■□□ 2.68
RAPGEF1-206ENST00000438647 RNF181Q9P0P0 153 aa31.82■■■□□ 2.68
RAPGEF1-206ENST00000438647 ZNF219Q9P2Y4 722 aaPredicted RBP31.82■■■□□ 2.68
RAPGEF1-206ENST00000438647 ARFGEF2Q9Y6D5 1785 aa31.81■■■□□ 2.68
RAPGEF1-206ENST00000438647 TNRC6CQ9HCJ0 1690 aaKnown RBP31.81■■■□□ 2.68
RAPGEF1-206ENST00000438647 NLRP3Q96P20 1036 aa31.81■■■□□ 2.68
RAPGEF1-206ENST00000438647 GPBP1L1Q9HC44 474 aaPredicted RBP31.81■■■□□ 2.68
RAPGEF1-206ENST00000438647 TRMT112Q9UI30 125 aaKnown RBP31.81■■■□□ 2.68
RAPGEF1-206ENST00000438647 SLX4Q8IY92 1834 aa31.8■■■□□ 2.68
RAPGEF1-206ENST00000438647 LMNB1P20700 586 aa31.8■■■□□ 2.68
RAPGEF1-206ENST00000438647 RASSF7Q02833 373 aa31.8■■■□□ 2.68
RAPGEF1-206ENST00000438647 SLC10A5Q5PT55 438 aa31.8■■■□□ 2.68
RAPGEF1-206ENST00000438647 ISCA1Q9BUE6 129 aa31.8■■■□□ 2.68
RAPGEF1-206ENST00000438647 SH3TC1Q8TE82 1336 aa31.79■■■□□ 2.68
RAPGEF1-206ENST00000438647 NFKBIEO00221 500 aa31.78■■■□□ 2.68
RAPGEF1-206ENST00000438647 CACNA1SQ13698 1873 aa31.78■■■□□ 2.68
RAPGEF1-206ENST00000438647 HOXA10P31260 410 aaPredicted RBP31.77■■■□□ 2.68
RAPGEF1-206ENST00000438647 TRIM28Q13263 835 aaKnown RBP31.77■■■□□ 2.68
RAPGEF1-206ENST00000438647 ATP5J2-PTCD1G3V325 749 aa31.76■■■□□ 2.67
RAPGEF1-206ENST00000438647 EXOSC9Q06265 439 aaKnown RBP31.76■■■□□ 2.67
RAPGEF1-206ENST00000438647 CCDC93Q567U6 631 aa31.76■■■□□ 2.67
RAPGEF1-206ENST00000438647 ZNF526Q8TF50 670 aaPredicted RBP31.76■■■□□ 2.67
RAPGEF1-206ENST00000438647 RBM17Q96I25 401 aaKnown RBP31.76■■■□□ 2.67
RAPGEF1-206ENST00000438647 TAOK3Q9H2K8 898 aa31.76■■■□□ 2.67
RAPGEF1-206ENST00000438647 SBF1O95248 1867 aa31.76■■■□□ 2.67
RAPGEF1-206ENST00000438647 ZNF521Q96K83 1311 aa31.75■■■□□ 2.67
RAPGEF1-206ENST00000438647 LTBP3Q9NS15 1303 aa31.75■■■□□ 2.67
RAPGEF1-206ENST00000438647 ZC3H4Q9UPT8 1303 aaKnown RBP31.75■■■□□ 2.67
RAPGEF1-206ENST00000438647 C7orf43Q8WVR3 580 aa31.75■■■□□ 2.67
RAPGEF1-206ENST00000438647 SPINK5Q9NQ38 1064 aaPredicted RBP31.75■■■□□ 2.67
RAPGEF1-206ENST00000438647 DIEXFQ68CQ4 756 aaKnown RBP31.74■■■□□ 2.67
RAPGEF1-206ENST00000438647 SLC4A2P04920 1241 aa31.73■■■□□ 2.67
RAPGEF1-206ENST00000438647 CRAMP1Q96RY5 1269 aa31.73■■■□□ 2.67
RAPGEF1-206ENST00000438647 FER1L6Q2WGJ9 1857 aa31.73■■■□□ 2.67
RAPGEF1-206ENST00000438647 TCERG1O14776 1098 aaKnown RBP31.72■■■□□ 2.67
RAPGEF1-206ENST00000438647 VAMP4O75379 141 aa31.72■■■□□ 2.67
RAPGEF1-206ENST00000438647 HCLS1P14317 486 aaPredicted RBP31.71■■■□□ 2.67
RAPGEF1-206ENST00000438647 KSR2Q6VAB6 950 aa31.71■■■□□ 2.67
RAPGEF1-206ENST00000438647 C3orf67Q6ZVT6 689 aa31.71■■■□□ 2.67
RAPGEF1-206ENST00000438647 RTKN2Q8IZC4 609 aa31.71■■■□□ 2.67
RAPGEF1-206ENST00000438647 MYD88Q99836 296 aa31.71■■■□□ 2.67
RAPGEF1-206ENST00000438647 METTL22Q9BUU2 404 aaPredicted RBP31.71■■■□□ 2.67
RAPGEF1-206ENST00000438647 CC2D2BQ6DHV5 1058 aa31.7■■■□□ 2.67
RAPGEF1-206ENST00000438647 SYNE4Q8N205 404 aa31.69■■■□□ 2.66
RAPGEF1-206ENST00000438647 CCDC191Q8NCU4 936 aa31.69■■■□□ 2.66
RAPGEF1-206ENST00000438647 MAP3K2Q9Y2U5 619 aa31.69■■■□□ 2.66
RAPGEF1-206ENST00000438647 PI4KAP2A4QPH2 592 aa31.68■■■□□ 2.66
RAPGEF1-206ENST00000438647 PRELPP51888 382 aa31.68■■■□□ 2.66
RAPGEF1-206ENST00000438647 PI4KAP1Q8N8J0 262 aa31.68■■■□□ 2.66
RAPGEF1-206ENST00000438647 FAM89AQ96GI7 184 aa31.68■■■□□ 2.66
RAPGEF1-206ENST00000438647 HSP90B1P14625 803 aaKnown RBP31.67■■■□□ 2.66
RAPGEF1-206ENST00000438647 KDM2BQ8NHM5 1336 aa31.67■■■□□ 2.66
RAPGEF1-206ENST00000438647 E9PSI1 815 aa31.66■■■□□ 2.66
RAPGEF1-206ENST00000438647 NEXNQ0ZGT2 675 aa31.66■■■□□ 2.66
RAPGEF1-206ENST00000438647 FLIIQ13045 1269 aa31.66■■■□□ 2.66
RAPGEF1-206ENST00000438647 GRIPAP1Q4V328 841 aa31.66■■■□□ 2.66
RAPGEF1-206ENST00000438647 ZBTB38Q8NAP3 1195 aaPredicted RBP31.66■■■□□ 2.66
RAPGEF1-206ENST00000438647 ZNF428Q96B54 188 aa31.66■■■□□ 2.66
RAPGEF1-206ENST00000438647 CWC25Q9NXE8 425 aaPredicted RBP31.66■■■□□ 2.66
RAPGEF1-206ENST00000438647 CACNA1FO60840 1977 aa31.66■■■□□ 2.66
RAPGEF1-206ENST00000438647 PPEF1O14829 653 aaPredicted RBP31.65■■■□□ 2.66
RAPGEF1-206ENST00000438647 FKBP4Q02790 459 aaKnown RBP eCLIP31.65■■■□□ 2.66
RAPGEF1-206ENST00000438647 G2E3Q7L622 706 aa31.65■■■□□ 2.66
RAPGEF1-206ENST00000438647 TMX4Q9H1E5 349 aaPredicted RBP31.65■■■□□ 2.66
RAPGEF1-206ENST00000438647 DDX46Q7L014 1031 aaKnown RBP31.64■■■□□ 2.66
RAPGEF1-206ENST00000438647 CCDC88AQ3V6T2 1871 aa31.63■■■□□ 2.65
RAPGEF1-206ENST00000438647 IRS4O14654 1257 aaPredicted RBP31.63■■■□□ 2.65
RAPGEF1-206ENST00000438647 OLFM4Q6UX06 510 aa31.63■■■□□ 2.65
RAPGEF1-206ENST00000438647 ABCC4O15439 1325 aa31.63■■■□□ 2.65
RAPGEF1-206ENST00000438647 C1QTNF8P60827 252 aa31.62■■■□□ 2.65
RAPGEF1-206ENST00000438647 FKBP5Q13451 457 aaPredicted RBP31.62■■■□□ 2.65
RAPGEF1-206ENST00000438647 RTL5Q5HYW3 569 aaPredicted RBP31.62■■■□□ 2.65
RAPGEF1-206ENST00000438647 LAMB2P55268 1798 aa31.61■■■□□ 2.65
RAPGEF1-206ENST00000438647 BBOX1O75936 387 aa31.61■■■□□ 2.65
RAPGEF1-206ENST00000438647 PCCAP05165 728 aaPredicted RBP31.61■■■□□ 2.65
RAPGEF1-206ENST00000438647 SF3B3Q15393 1217 aaKnown RBP31.6■■■□□ 2.65
RAPGEF1-206ENST00000438647 PSMD1Q99460 953 aa31.6■■■□□ 2.65
RAPGEF1-206ENST00000438647 TIAM2Q8IVF5 1701 aa31.6■■■□□ 2.65
RAPGEF1-206ENST00000438647 DDX60Q8IY21 1712 aaKnown RBP31.6■■■□□ 2.65
RAPGEF1-206ENST00000438647 DICER1Q9UPY3 1922 aaKnown RBP31.59■■■□□ 2.65
RAPGEF1-206ENST00000438647 GLTPD2A6NH11 291 aa31.58■■■□□ 2.65
RAPGEF1-206ENST00000438647 GRAPQ13588 217 aa31.58■■■□□ 2.65
RAPGEF1-206ENST00000438647 DPY19L2Q6NUT2 758 aa31.58■■■□□ 2.65
RAPGEF1-206ENST00000438647 MIER1Q8N108 512 aa31.58■■■□□ 2.65
RAPGEF1-206ENST00000438647 GRAPLQ8TC17 118 aaPredicted RBP31.58■■■□□ 2.65
RAPGEF1-206ENST00000438647 ATP6V0A2Q9Y487 856 aa31.58■■■□□ 2.65
RAPGEF1-206ENST00000438647 SNED1Q8TER0 1413 aa31.58■■■□□ 2.65
RAPGEF1-206ENST00000438647 KIF3CO14782 793 aa31.57■■■□□ 2.64
RAPGEF1-206ENST00000438647 IGKV5-2P06315 115 aa31.57■■■□□ 2.64
RAPGEF1-206ENST00000438647 SLFN5Q08AF3 891 aa31.57■■■□□ 2.64
RAPGEF1-206ENST00000438647 TMC4Q7Z404 712 aa31.57■■■□□ 2.64
RAPGEF1-206ENST00000438647 DNAAF4Q8WXU2 420 aa31.57■■■□□ 2.64
RAPGEF1-206ENST00000438647 NMRK2Q9NPI5 230 aa31.57■■■□□ 2.64
RAPGEF1-206ENST00000438647 ZNF277Q9NRM2 450 aaPredicted RBP31.57■■■□□ 2.64
RAPGEF1-206ENST00000438647 NEURL1BA8MQ27 555 aa31.54■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms