RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 STK31Q9BXU1 1019 aa18.31■□□□□ 0.52
USP4-203ENST00000415188 NARFQ9UHQ1 456 aa18.31■□□□□ 0.52
USP4-203ENST00000415188 ADCY9O60503 1353 aa18.31■□□□□ 0.52
USP4-203ENST00000415188 HEG1Q9ULI3 1381 aa18.31■□□□□ 0.52
USP4-203ENST00000415188 STARD3NLO95772 234 aa18.3■□□□□ 0.52
USP4-203ENST00000415188 KCNA3P22001 575 aa18.3■□□□□ 0.52
USP4-203ENST00000415188 CCDC30Q5VVM6 783 aa18.3■□□□□ 0.52
USP4-203ENST00000415188 CHMP4AQ9BY43 222 aa18.3■□□□□ 0.52
USP4-203ENST00000415188 BCL2L12Q9HB09 334 aa18.3■□□□□ 0.52
USP4-203ENST00000415188 CDC45O75419 566 aa18.29■□□□□ 0.52
USP4-203ENST00000415188 NFIXQ14938 502 aa18.29■□□□□ 0.52
USP4-203ENST00000415188 HSCBQ8IWL3 235 aa18.29■□□□□ 0.52
USP4-203ENST00000415188 BTBD11A6QL63 1104 aa18.28■□□□□ 0.52
USP4-203ENST00000415188 EIF5P55010 431 aaKnown RBP18.27■□□□□ 0.52
USP4-203ENST00000415188 GSE1Q14687 1217 aa18.27■□□□□ 0.52
USP4-203ENST00000415188 TAF7Q15545 349 aaPredicted RBP18.27■□□□□ 0.52
USP4-203ENST00000415188 ZNF526Q8TF50 670 aaPredicted RBP18.27■□□□□ 0.52
USP4-203ENST00000415188 FMNL2Q96PY5 1086 aa18.27■□□□□ 0.52
USP4-203ENST00000415188 KDM3BQ7LBC6 1761 aa18.27■□□□□ 0.52
USP4-203ENST00000415188 FRAT2O75474 233 aaPredicted RBP18.26■□□□□ 0.51
USP4-203ENST00000415188 CHRNA5P30532 468 aa18.26■□□□□ 0.51
USP4-203ENST00000415188 PLEKHM2Q8IWE5 1019 aa18.26■□□□□ 0.51
USP4-203ENST00000415188 BRCA1P38398 1863 aaKnown RBP18.26■□□□□ 0.51
USP4-203ENST00000415188 TTC22Q5TAA0 569 aa18.26■□□□□ 0.51
USP4-203ENST00000415188 TBC1D9Q6ZT07 1266 aa18.26■□□□□ 0.51
USP4-203ENST00000415188 TEX13AQ9BXU3 409 aaPredicted RBP18.26■□□□□ 0.51
USP4-203ENST00000415188 ZNF330Q9Y3S2 320 aaPredicted RBP18.26■□□□□ 0.51
USP4-203ENST00000415188 A1BGP04217 495 aa18.25■□□□□ 0.51
USP4-203ENST00000415188 GNAI3P08754 354 aa18.25■□□□□ 0.51
USP4-203ENST00000415188 ARHGAP27Q6ZUM4 889 aa18.25■□□□□ 0.51
USP4-203ENST00000415188 MEIS3Q99687 375 aa18.25■□□□□ 0.51
USP4-203ENST00000415188 MIS18AQ9NYP9 233 aa18.25■□□□□ 0.51
USP4-203ENST00000415188 PRAMEF22A3QJZ6 481 aa18.24■□□□□ 0.51
USP4-203ENST00000415188 HOXB7P09629 217 aa18.24■□□□□ 0.51
USP4-203ENST00000415188 BICDL1Q6ZP65 573 aa18.24■□□□□ 0.51
USP4-203ENST00000415188 SLKQ9H2G2 1235 aaPredicted RBP18.24■□□□□ 0.51
USP4-203ENST00000415188 GPBP1L1Q9HC44 474 aaPredicted RBP18.24■□□□□ 0.51
USP4-203ENST00000415188 CHMP5Q9NZZ3 219 aa18.24■□□□□ 0.51
USP4-203ENST00000415188 PIM2Q9P1W9 311 aa18.24■□□□□ 0.51
USP4-203ENST00000415188 TBC1D2BQ9UPU7 963 aa18.24■□□□□ 0.51
USP4-203ENST00000415188 A0A087WZG4 1122 aa18.23■□□□□ 0.51
USP4-203ENST00000415188 GNAI2P04899 355 aa18.23■□□□□ 0.51
USP4-203ENST00000415188 SERPINB2P05120 415 aa18.23■□□□□ 0.51
USP4-203ENST00000415188 FLIIQ13045 1269 aa18.23■□□□□ 0.51
USP4-203ENST00000415188 AFDNP55196 1824 aaKnown RBP18.23■□□□□ 0.51
USP4-203ENST00000415188 PIP4K2AP48426 406 aaPredicted RBP18.22■□□□□ 0.51
USP4-203ENST00000415188 DALRD3Q5D0E6 543 aaKnown RBP18.22■□□□□ 0.51
USP4-203ENST00000415188 G2E3Q7L622 706 aa18.22■□□□□ 0.51
USP4-203ENST00000415188 BCL11AQ9H165 835 aa18.22■□□□□ 0.51
USP4-203ENST00000415188 USP16Q9Y5T5 823 aa18.22■□□□□ 0.51
USP4-203ENST00000415188 IL6STP40189 918 aaPredicted RBP18.21■□□□□ 0.51
USP4-203ENST00000415188 TBC1D9BQ66K14 1250 aa18.21■□□□□ 0.51
USP4-203ENST00000415188 NRXN2Q9P2S2 1712 aa18.21■□□□□ 0.51
USP4-203ENST00000415188 GSPT1P15170 499 aaKnown RBP18.2■□□□□ 0.5
USP4-203ENST00000415188 CASC1Q6TDU7 716 aa18.2■□□□□ 0.5
USP4-203ENST00000415188 CIZ1Q9ULV3 898 aaPredicted RBP18.2■□□□□ 0.5
USP4-203ENST00000415188 CARMIL3Q8ND23 1372 aa18.2■□□□□ 0.5
USP4-203ENST00000415188 OSBPL3Q9H4L5 887 aa18.2■□□□□ 0.5
USP4-203ENST00000415188 SCN7AQ01118 1682 aa18.19■□□□□ 0.5
USP4-203ENST00000415188 ARFGEF1Q9Y6D6 1849 aa18.19■□□□□ 0.5
USP4-203ENST00000415188 CAMTA2O94983 1202 aa18.19■□□□□ 0.5
USP4-203ENST00000415188 FKBP5Q13451 457 aaPredicted RBP18.19■□□□□ 0.5
USP4-203ENST00000415188 SLC4A10Q6U841 1118 aa18.19■□□□□ 0.5
USP4-203ENST00000415188 SNRPA1P09661 255 aaKnown RBP18.18■□□□□ 0.5
USP4-203ENST00000415188 F6X3S4 739 aa18.17■□□□□ 0.5
USP4-203ENST00000415188 C9orf131Q5VYM1 1079 aa18.17■□□□□ 0.5
USP4-203ENST00000415188 CCDC24Q8N4L8 307 aa18.17■□□□□ 0.5
USP4-203ENST00000415188 ATP8B2P98198 1209 aa18.16■□□□□ 0.5
USP4-203ENST00000415188 DZIP3Q86Y13 1208 aaKnown RBP18.16■□□□□ 0.5
USP4-203ENST00000415188 C2CD5Q86YS7 1000 aa18.16■□□□□ 0.5
USP4-203ENST00000415188 KIF2CQ99661 725 aa18.16■□□□□ 0.5
USP4-203ENST00000415188 HDGFL1Q5TGJ6 251 aa18.15■□□□□ 0.5
USP4-203ENST00000415188 NBPF26B4DH59 902 aa18.14■□□□□ 0.5
USP4-203ENST00000415188 KIF3CO14782 793 aa18.14■□□□□ 0.5
USP4-203ENST00000415188 DDIT3P35638 169 aa18.14■□□□□ 0.5
USP4-203ENST00000415188 RABEP1Q15276 862 aa18.14■□□□□ 0.5
USP4-203ENST00000415188 PRR5LQ6MZQ0 368 aa18.14■□□□□ 0.5
USP4-203ENST00000415188 NBPF10Q6P3W6 841 aaKnown RBP18.14■□□□□ 0.5
USP4-203ENST00000415188 NBPF15Q8N660 670 aa18.14■□□□□ 0.5
USP4-203ENST00000415188 EIF4A1P60842 406 aaKnown RBP18.14■□□□□ 0.49
USP4-203ENST00000415188 H0YIN7 160 aa18.13■□□□□ 0.49
USP4-203ENST00000415188 REC8O95072 547 aa18.13■□□□□ 0.49
USP4-203ENST00000415188 RASSF7Q02833 373 aa18.13■□□□□ 0.49
USP4-203ENST00000415188 SETDB2Q96T68 719 aa18.13■□□□□ 0.49
USP4-203ENST00000415188 RNF181Q9P0P0 153 aa18.13■□□□□ 0.49
USP4-203ENST00000415188 AOX1Q06278 1338 aa18.12■□□□□ 0.49
USP4-203ENST00000415188 BCORQ6W2J9 1755 aa18.12■□□□□ 0.49
USP4-203ENST00000415188 IBTKQ9P2D0 1353 aaPredicted RBP18.12■□□□□ 0.49
USP4-203ENST00000415188 ANKRD31Q8N7Z5 1873 aa18.12■□□□□ 0.49
USP4-203ENST00000415188 DLEC1Q9Y238 1755 aa18.12■□□□□ 0.49
USP4-203ENST00000415188 K7ELQ4 463 aaPredicted RBP18.12■□□□□ 0.49
USP4-203ENST00000415188 SDSP20132 328 aa18.12■□□□□ 0.49
USP4-203ENST00000415188 MCM4P33991 863 aa18.12■□□□□ 0.49
USP4-203ENST00000415188 C16orf71Q8IYS4 520 aaPredicted RBP18.12■□□□□ 0.49
USP4-203ENST00000415188 TTLL6Q8N841 843 aa18.12■□□□□ 0.49
USP4-203ENST00000415188 LRRCC1Q9C099 1032 aa18.12■□□□□ 0.49
USP4-203ENST00000415188 SRCIN1Q9C0H9 1055 aa18.12■□□□□ 0.49
USP4-203ENST00000415188 PTMSP20962 102 aa18.11■□□□□ 0.49
USP4-203ENST00000415188 PDE1AP54750 535 aa18.11■□□□□ 0.49
USP4-203ENST00000415188 BRIP1Q9BX63 1249 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms