RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 NPHP1O15259 732 aa28.62■■■□□ 2.17
PTCD3-203ENST00000409783 PDE6BP35913 854 aa28.62■■■□□ 2.17
PTCD3-203ENST00000409783 MYD88Q99836 296 aa28.62■■■□□ 2.17
PTCD3-203ENST00000409783 UTP14AQ9BVJ6 771 aaKnown RBP28.62■■■□□ 2.17
PTCD3-203ENST00000409783 C2CD5Q86YS7 1000 aa28.61■■■□□ 2.17
PTCD3-203ENST00000409783 WWC3Q9ULE0 1092 aa28.61■■■□□ 2.17
PTCD3-203ENST00000409783 FKBP5Q13451 457 aaPredicted RBP28.6■■■□□ 2.17
PTCD3-203ENST00000409783 ALDH1L2Q3SY69 923 aa28.6■■■□□ 2.17
PTCD3-203ENST00000409783 RNF123Q5XPI4 1314 aa28.6■■■□□ 2.17
PTCD3-203ENST00000409783 GOLGB1Q14789 3259 aaKnown RBP28.59■■■□□ 2.17
PTCD3-203ENST00000409783 GTF2E1P29083 439 aaPredicted RBP28.59■■■□□ 2.17
PTCD3-203ENST00000409783 SYNE4Q8N205 404 aa28.59■■■□□ 2.17
PTCD3-203ENST00000409783 PDZRN3Q9UPQ7 1066 aa28.59■■■□□ 2.17
PTCD3-203ENST00000409783 ARFGEF1Q9Y6D6 1849 aa28.58■■■□□ 2.17
PTCD3-203ENST00000409783 H0YIN7 160 aa28.58■■■□□ 2.17
PTCD3-203ENST00000409783 IGKV5-2P06315 115 aa28.58■■■□□ 2.17
PTCD3-203ENST00000409783 GPR162Q16538 588 aa28.58■■■□□ 2.17
PTCD3-203ENST00000409783 SLC10A5Q5PT55 438 aa28.58■■■□□ 2.17
PTCD3-203ENST00000409783 PIM2Q9P1W9 311 aa28.58■■■□□ 2.17
PTCD3-203ENST00000409783 SRGNP10124 158 aa28.57■■■□□ 2.16
PTCD3-203ENST00000409783 PELP1Q8IZL8 1130 aaKnown RBP28.57■■■□□ 2.16
PTCD3-203ENST00000409783 TRMT112Q9UI30 125 aaKnown RBP28.57■■■□□ 2.16
PTCD3-203ENST00000409783 DDX60Q8IY21 1712 aaKnown RBP28.57■■■□□ 2.16
PTCD3-203ENST00000409783 LAMB2P55268 1798 aa28.56■■■□□ 2.16
PTCD3-203ENST00000409783 CCDC191Q8NCU4 936 aa28.56■■■□□ 2.16
PTCD3-203ENST00000409783 DNAAF4Q8WXU2 420 aa28.56■■■□□ 2.16
PTCD3-203ENST00000409783 BCL2L13Q9BXK5 485 aa28.56■■■□□ 2.16
PTCD3-203ENST00000409783 SH3TC1Q8TE82 1336 aa28.54■■■□□ 2.16
PTCD3-203ENST00000409783 DCAF8L1A6NGE4 600 aa28.54■■■□□ 2.16
PTCD3-203ENST00000409783 F6X3S4 739 aa28.54■■■□□ 2.16
PTCD3-203ENST00000409783 RARSP54136 660 aaKnown RBP28.54■■■□□ 2.16
PTCD3-203ENST00000409783 CRY2Q49AN0 593 aa28.54■■■□□ 2.16
PTCD3-203ENST00000409783 C3orf67Q6ZVT6 689 aa28.54■■■□□ 2.16
PTCD3-203ENST00000409783 FAM89AQ96GI7 184 aa28.53■■■□□ 2.16
PTCD3-203ENST00000409783 BCS1LQ9Y276 419 aa28.53■■■□□ 2.16
PTCD3-203ENST00000409783 NEURL1BA8MQ27 555 aa28.52■■■□□ 2.16
PTCD3-203ENST00000409783 BRPF1P55201 1214 aaPredicted RBP28.52■■■□□ 2.16
PTCD3-203ENST00000409783 NEXNQ0ZGT2 675 aa28.52■■■□□ 2.16
PTCD3-203ENST00000409783 CWF19L2Q2TBE0 894 aaKnown RBP28.52■■■□□ 2.16
PTCD3-203ENST00000409783 DALRD3Q5D0E6 543 aaKnown RBP28.52■■■□□ 2.16
PTCD3-203ENST00000409783 STYK1Q6J9G0 422 aa28.52■■■□□ 2.16
PTCD3-203ENST00000409783 MASTLQ96GX5 879 aa28.52■■■□□ 2.16
PTCD3-203ENST00000409783 SMC4Q9NTJ3 1288 aa28.52■■■□□ 2.16
PTCD3-203ENST00000409783 CWC25Q9NXE8 425 aaPredicted RBP28.52■■■□□ 2.16
PTCD3-203ENST00000409783 CACNA1SQ13698 1873 aa28.52■■■□□ 2.16
PTCD3-203ENST00000409783 UTRNP46939 3433 aa28.51■■■□□ 2.15
PTCD3-203ENST00000409783 SLX4Q8IY92 1834 aa28.51■■■□□ 2.15
PTCD3-203ENST00000409783 HCLS1P14317 486 aaPredicted RBP28.5■■■□□ 2.15
PTCD3-203ENST00000409783 TTLL6Q8N841 843 aa28.5■■■□□ 2.15
PTCD3-203ENST00000409783 ZBTB38Q8NAP3 1195 aaPredicted RBP28.5■■■□□ 2.15
PTCD3-203ENST00000409783 LINS1Q8NG48 757 aa28.5■■■□□ 2.15
PTCD3-203ENST00000409783 ZNF622Q969S3 477 aaKnown RBP eCLIP28.5■■■□□ 2.153e-8■■□□□ 11.5
PTCD3-203ENST00000409783 PTPRCP08575 1304 aa28.49■■■□□ 2.15
PTCD3-203ENST00000409783 GRIN3BO60391 1043 aa28.49■■■□□ 2.15
PTCD3-203ENST00000409783 PCCAP05165 728 aaPredicted RBP28.49■■■□□ 2.15
PTCD3-203ENST00000409783 NPR1P16066 1061 aa28.49■■■□□ 2.15
PTCD3-203ENST00000409783 BEND3Q5T5X7 828 aa28.49■■■□□ 2.15
PTCD3-203ENST00000409783 RTL5Q5HYW3 569 aaPredicted RBP28.48■■■□□ 2.15
PTCD3-203ENST00000409783 NLRP3Q96P20 1036 aa28.48■■■□□ 2.15
PTCD3-203ENST00000409783 HOXA10P31260 410 aaPredicted RBP28.47■■■□□ 2.15
PTCD3-203ENST00000409783 CHD4Q14839 1912 aa28.46■■■□□ 2.15
PTCD3-203ENST00000409783 GCKRQ14397 625 aa28.46■■■□□ 2.15
PTCD3-203ENST00000409783 JARID2Q92833 1246 aaPredicted RBP28.46■■■□□ 2.15
PTCD3-203ENST00000409783 CNKSR1Q969H4 720 aa28.46■■■□□ 2.15
PTCD3-203ENST00000409783 IRS4O14654 1257 aaPredicted RBP28.45■■■□□ 2.14
PTCD3-203ENST00000409783 H7C1W4 665 aa28.44■■■□□ 2.14
PTCD3-203ENST00000409783 CDHR2Q9BYE9 1310 aa28.43■■■□□ 2.14
PTCD3-203ENST00000409783 PRPF40BQ6NWY9 871 aaKnown RBP28.43■■■□□ 2.14
PTCD3-203ENST00000409783 NOB1Q9ULX3 412 aaKnown RBP28.43■■■□□ 2.14
PTCD3-203ENST00000409783 BCAR3O75815 825 aa28.42■■■□□ 2.14
PTCD3-203ENST00000409783 CASP7P55210 303 aa28.42■■■□□ 2.14
PTCD3-203ENST00000409783 SF3B3Q15393 1217 aaKnown RBP28.42■■■□□ 2.14
PTCD3-203ENST00000409783 C7orf43Q8WVR3 580 aa28.42■■■□□ 2.14
PTCD3-203ENST00000409783 TAF1P21675 1872 aa28.41■■■□□ 2.14
PTCD3-203ENST00000409783 SLC4A10Q6U841 1118 aa28.41■■■□□ 2.14
PTCD3-203ENST00000409783 RPGRQ92834 1020 aaKnown RBP28.41■■■□□ 2.14
PTCD3-203ENST00000409783 CRAMP1Q96RY5 1269 aa28.41■■■□□ 2.14
PTCD3-203ENST00000409783 MYH3P11055 1940 aa28.4■■■□□ 2.14
PTCD3-203ENST00000409783 ALDH1L1O75891 902 aa28.4■■■□□ 2.14
PTCD3-203ENST00000409783 ALDH1B1P30837 517 aa28.4■■■□□ 2.14
PTCD3-203ENST00000409783 UBE3BQ7Z3V4 1068 aa28.39■■■□□ 2.14
PTCD3-203ENST00000409783 RBM17Q96I25 401 aaKnown RBP28.39■■■□□ 2.14
PTCD3-203ENST00000409783 SRCIN1Q9C0H9 1055 aa28.39■■■□□ 2.14
PTCD3-203ENST00000409783 KIF16BQ96L93 1317 aa28.39■■■□□ 2.13
PTCD3-203ENST00000409783 FER1L6Q2WGJ9 1857 aa28.38■■■□□ 2.13
PTCD3-203ENST00000409783 C21orf2O43822 256 aa28.38■■■□□ 2.13
PTCD3-203ENST00000409783 PDE8AO60658 829 aa28.38■■■□□ 2.13
PTCD3-203ENST00000409783 COL4A1P02462 1669 aa28.38■■■□□ 2.13
PTCD3-203ENST00000409783 ARHGAP27Q6ZUM4 889 aa28.37■■■□□ 2.13
PTCD3-203ENST00000409783 ARHGAP45Q92619 1136 aa28.37■■■□□ 2.13
PTCD3-203ENST00000409783 ABCC4O15439 1325 aa28.37■■■□□ 2.13
PTCD3-203ENST00000409783 HSP90B1P14625 803 aaKnown RBP28.36■■■□□ 2.13
PTCD3-203ENST00000409783 ZNF219Q9P2Y4 722 aaPredicted RBP28.36■■■□□ 2.13
PTCD3-203ENST00000409783 SBF1O95248 1867 aa28.36■■■□□ 2.13
PTCD3-203ENST00000409783 PLA2G12BQ9BX93 195 aa28.35■■■□□ 2.13
PTCD3-203ENST00000409783 API5Q9BZZ5 524 aaKnown RBP28.35■■■□□ 2.13
PTCD3-203ENST00000409783 SNED1Q8TER0 1413 aa28.35■■■□□ 2.13
PTCD3-203ENST00000409783 GRM8O00222 908 aa28.34■■■□□ 2.13
PTCD3-203ENST00000409783 OLFM4Q6UX06 510 aa28.34■■■□□ 2.13
PTCD3-203ENST00000409783 SLC51AQ86UW1 340 aa28.33■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms