RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 PLCB2Q00722 1185 aa15.17■□□□□ 0.02
SHMT1-205ENST00000395684 JARID2Q92833 1246 aaPredicted RBP15.17■□□□□ 0.02
SHMT1-205ENST00000395684 SUCLG2Q96I99 432 aa15.17■□□□□ 0.02
SHMT1-205ENST00000395684 CCDC8Q9H0W5 538 aaPredicted RBP15.17■□□□□ 0.02
SHMT1-205ENST00000395684 PLEKHO1Q53GL0 409 aaPredicted RBP15.17■□□□□ 0.02
SHMT1-205ENST00000395684 MYRIPQ8NFW9 859 aa15.17■□□□□ 0.02
SHMT1-205ENST00000395684 RBM33Q96EV2 1170 aaKnown RBP15.17■□□□□ 0.02
SHMT1-205ENST00000395684 NFAT5O94916 1531 aa15.16■□□□□ 0.02
SHMT1-205ENST00000395684 LARP1BQ659C4 914 aaKnown RBP15.16■□□□□ 0.02
SHMT1-205ENST00000395684 FAM173BQ6P4H8 233 aa15.16■□□□□ 0.02
SHMT1-205ENST00000395684 TTC6Q86TZ1 520 aa15.16■□□□□ 0.02
SHMT1-205ENST00000395684 TLR7Q9NYK1 1049 aaKnown RBP15.16■□□□□ 0.02
SHMT1-205ENST00000395684 TAF6LQ9Y6J9 622 aa15.16■□□□□ 0.02
SHMT1-205ENST00000395684 SLC27A2O14975 620 aa15.16■□□□□ 0.02
SHMT1-205ENST00000395684 KCNJ4P48050 445 aa15.16■□□□□ 0.02
SHMT1-205ENST00000395684 CDC37L1Q7L3B6 337 aa15.16■□□□□ 0.02
SHMT1-205ENST00000395684 FERMT3Q86UX7 667 aa15.16■□□□□ 0.02
SHMT1-205ENST00000395684 TCEANC2Q96MN5 208 aa15.16■□□□□ 0.02
SHMT1-205ENST00000395684 BICC1Q9H694 974 aaKnown RBP15.16■□□□□ 0.02
SHMT1-205ENST00000395684 SPTLC3Q9NUV7 552 aa15.15■□□□□ 0.02
SHMT1-205ENST00000395684 HEG1Q9ULI3 1381 aa15.15■□□□□ 0.02
SHMT1-205ENST00000395684 A0A0D9SFI3 127 aa15.15■□□□□ 0.02
SHMT1-205ENST00000395684 GRM8O00222 908 aa15.15■□□□□ 0.02
SHMT1-205ENST00000395684 KLHL34Q8N239 644 aa15.15■□□□□ 0.02
SHMT1-205ENST00000395684 SNRKQ9NRH2 765 aa15.15■□□□□ 0.02
SHMT1-205ENST00000395684 LINS1Q8NG48 757 aa15.14■□□□□ 0.01
SHMT1-205ENST00000395684 BOLA2Q9H3K6 86 aa15.14■□□□□ 0.01
SHMT1-205ENST00000395684 CHMP3Q9Y3E7 222 aa15.14■□□□□ 0.01
SHMT1-205ENST00000395684 PXDNQ92626 1479 aa15.14■□□□□ 0.01
SHMT1-205ENST00000395684 G3BP1Q13283 466 aaKnown RBP eCLIP15.14■□□□□ 0.01
SHMT1-205ENST00000395684 TSC1Q92574 1164 aa15.14■□□□□ 0.01
SHMT1-205ENST00000395684 KCNF1Q9H3M0 494 aa15.14■□□□□ 0.01
SHMT1-205ENST00000395684 LIG1P18858 919 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 AIMP1Q12904 312 aaKnown RBP15.13■□□□□ 0.01
SHMT1-205ENST00000395684 AMOTQ4VCS5 1084 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 KLHDC4Q8TBB5 520 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 PRIMPOLQ96LW4 560 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 SIL1Q9H173 461 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 HDAC5Q9UQL6 1122 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 UTYO14607 1347 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 RGPD2P0DJD1 1756 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 LMO7Q8WWI1 1683 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 HIP1O00291 1037 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 CCDC192P0DO97 292 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 PSMA5P28066 241 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 KRT85P78386 507 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 PSME1Q06323 249 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 C1orf141Q5JVX7 400 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 KCNH5Q8NCM2 988 aa15.13■□□□□ 0.01
SHMT1-205ENST00000395684 NPHP4O75161 1426 aaPredicted RBP15.13■□□□□ 0.01
SHMT1-205ENST00000395684 CAMK4Q16566 473 aa15.12■□□□□ 0.01
SHMT1-205ENST00000395684 MTERF4Q7Z6M4 381 aaKnown RBP15.12■□□□□ 0.01
SHMT1-205ENST00000395684 ARID3AQ99856 593 aa15.12■□□□□ 0.01
SHMT1-205ENST00000395684 TOB2Q14106 344 aaPredicted RBP15.12■□□□□ 0.01
SHMT1-205ENST00000395684 BLOC1S2Q6QNY1 142 aa15.12■□□□□ 0.01
SHMT1-205ENST00000395684 ZNF589Q86UQ0 364 aaPredicted RBP15.12■□□□□ 0.01
SHMT1-205ENST00000395684 FSD1Q9BTV5 496 aa15.12■□□□□ 0.01
SHMT1-205ENST00000395684 IGKV5-2P06315 115 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 RPS6KB1P23443 525 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 PDIA6Q15084 440 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 SPC24Q8NBT2 197 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 KIAA1524Q8TCG1 905 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 PYCARDQ9ULZ3 195 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 HMGN5P82970 282 aaKnown RBP15.11■□□□□ 0.01
SHMT1-205ENST00000395684 ESCO1Q5FWF5 840 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 PKNOX2Q96KN3 472 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 ELP1O95163 1332 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 MED23Q9ULK4 1368 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 ADGRL3Q9HAR2 1447 aa15.11■□□□□ 0.01
SHMT1-205ENST00000395684 LARP1Q6PKG0 1096 aaKnown RBP15.1■□□□□ 0.01
SHMT1-205ENST00000395684 EDC3Q96F86 508 aaKnown RBP15.1■□□□□ 0.01
SHMT1-205ENST00000395684 TFIP11Q9UBB9 837 aaKnown RBP15.1■□□□□ 0.01
SHMT1-205ENST00000395684 MRVI1Q9Y6F6 885 aa15.1■□□□□ 0.01
SHMT1-205ENST00000395684 PDCP20941 246 aa15.1■□□□□ 0.01
SHMT1-205ENST00000395684 GTF2F1P35269 517 aaKnown RBP eCLIP15.1■□□□□ 0.01
SHMT1-205ENST00000395684 MAP3K11Q16584 847 aa15.1■□□□□ 0.01
SHMT1-205ENST00000395684 ZNF710Q8N1W2 664 aa15.1■□□□□ 0.01
SHMT1-205ENST00000395684 FAM200AQ8TCP9 573 aa15.1■□□□□ 0.01
SHMT1-205ENST00000395684 NUP62CLQ9H1M0 184 aa15.1■□□□□ 0.01
SHMT1-205ENST00000395684 DDX21Q9NR30 783 aaKnown RBP eCLIP15.1■□□□□ 0.01
SHMT1-205ENST00000395684 TYRO3Q06418 890 aa15.1■□□□□ 0.01
SHMT1-205ENST00000395684 STK3Q13188 491 aa15.1■□□□□ 0.01
SHMT1-205ENST00000395684 ANKRD1Q15327 319 aa15.1■□□□□ 0.01
SHMT1-205ENST00000395684 RNF20Q5VTR2 975 aa15.1■□□□□ 0.01
SHMT1-205ENST00000395684 ALDH8A1Q9H2A2 487 aaPredicted RBP15.1■□□□□ 0.01
SHMT1-205ENST00000395684 GCP02774 474 aa15.09■□□□□ 0.01
SHMT1-205ENST00000395684 PDIA4P13667 645 aaKnown RBP15.09■□□□□ 0.01
SHMT1-205ENST00000395684 EPHA10Q5JZY3 1008 aa15.09■□□□□ 0.01
SHMT1-205ENST00000395684 LUZP1Q86V48 1076 aa15.09■□□□□ 0.01
SHMT1-205ENST00000395684 ARHGEF25Q86VW2 580 aa15.09■□□□□ 0.01
SHMT1-205ENST00000395684 CKAP2LQ8IYA6 745 aa15.09■□□□□ 0.01
SHMT1-205ENST00000395684 DACT1Q9NYF0 836 aa15.09■□□□□ 0.01
SHMT1-205ENST00000395684 FAM177BA6PVY3 158 aa15.09■□□□□ 0.01
SHMT1-205ENST00000395684 DDX58O95786 925 aaKnown RBP15.09■□□□□ 0.01
SHMT1-205ENST00000395684 NCAPD2Q15021 1401 aa15.08■□□□□ 0.01
SHMT1-205ENST00000395684 TAF5LO75529 589 aa15.08■□□□□ 0
SHMT1-205ENST00000395684 TSGA10IPQ3SY00 556 aa15.08■□□□□ 0
SHMT1-205ENST00000395684 ANKRD24Q8TF21 1146 aa15.08■□□□□ 0
SHMT1-205ENST00000395684 RIC3Q7Z5B4 369 aa15.08■□□□□ 0
SHMT1-205ENST00000395684 SPATA32Q96LK8 384 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms