RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 CHL1O00533 1208 aa20.26■□□□□ 0.83
PTPRU-202ENST00000373779 EPB41L2O43491 1005 aaKnown RBP20.26■□□□□ 0.83
PTPRU-202ENST00000373779 SYT1P21579 422 aa20.26■□□□□ 0.83
PTPRU-202ENST00000373779 TYRO3Q06418 890 aa20.26■□□□□ 0.83
PTPRU-202ENST00000373779 UBE3BQ7Z3V4 1068 aa20.26■□□□□ 0.83
PTPRU-202ENST00000373779 TRIM34Q9BYJ4 488 aa20.26■□□□□ 0.83
PTPRU-202ENST00000373779 GRM8O00222 908 aa20.25■□□□□ 0.83
PTPRU-202ENST00000373779 ARHGAP29Q52LW3 1261 aa20.25■□□□□ 0.83
PTPRU-202ENST00000373779 MAP3K5Q99683 1374 aa20.25■□□□□ 0.83
PTPRU-202ENST00000373779 CDR1P51861 262 aa20.25■□□□□ 0.83
PTPRU-202ENST00000373779 SNW1Q13573 536 aaKnown RBP20.25■□□□□ 0.83
PTPRU-202ENST00000373779 KSR2Q6VAB6 950 aa20.25■□□□□ 0.83
PTPRU-202ENST00000373779 GSPT1P15170 499 aaKnown RBP20.25■□□□□ 0.83
PTPRU-202ENST00000373779 CASQ1P31415 396 aa20.25■□□□□ 0.83
PTPRU-202ENST00000373779 CDK5RAP3Q96JB5 506 aa20.25■□□□□ 0.83
PTPRU-202ENST00000373779 PRDM11Q9NQV5 511 aa20.25■□□□□ 0.83
PTPRU-202ENST00000373779 PA2G4Q9UQ80 394 aaKnown RBP20.25■□□□□ 0.83
PTPRU-202ENST00000373779 NCKAP5LQ9HCH0 1330 aa20.25■□□□□ 0.83
PTPRU-202ENST00000373779 AXDND1Q5T1B0 1012 aaPredicted RBP20.24■□□□□ 0.83
PTPRU-202ENST00000373779 USP16Q9Y5T5 823 aa20.24■□□□□ 0.83
PTPRU-202ENST00000373779 DNAJC25Q9H1X3 360 aa20.24■□□□□ 0.83
PTPRU-202ENST00000373779 CREB3L3Q68CJ9 461 aa20.24■□□□□ 0.83
PTPRU-202ENST00000373779 CCDC150Q8NCX0 1101 aa20.24■□□□□ 0.83
PTPRU-202ENST00000373779 EYA1Q99502 592 aa20.24■□□□□ 0.83
PTPRU-202ENST00000373779 ANTXR1Q9H6X2 564 aa20.24■□□□□ 0.83
PTPRU-202ENST00000373779 RUFY3Q7L099 469 aa20.24■□□□□ 0.83
PTPRU-202ENST00000373779 PTCD1O75127 700 aaKnown RBP20.24■□□□□ 0.83
PTPRU-202ENST00000373779 DDX46Q7L014 1031 aaKnown RBP20.24■□□□□ 0.83
PTPRU-202ENST00000373779 CNNM3Q8NE01 707 aa20.24■□□□□ 0.83
PTPRU-202ENST00000373779 PLEKHF1Q96S99 279 aa20.24■□□□□ 0.83
PTPRU-202ENST00000373779 ORC3Q9UBD5 711 aaPredicted RBP20.23■□□□□ 0.83
PTPRU-202ENST00000373779 POLR3DP05423 398 aaPredicted RBP20.23■□□□□ 0.83
PTPRU-202ENST00000373779 ATP5J2-PTCD1G3V325 749 aa20.23■□□□□ 0.83
PTPRU-202ENST00000373779 PPFIA3O75145 1194 aa20.23■□□□□ 0.83
PTPRU-202ENST00000373779 Q6ZUG5 572 aa20.23■□□□□ 0.83
PTPRU-202ENST00000373779 TRPM1Q7Z4N2 1603 aa20.22■□□□□ 0.83
PTPRU-202ENST00000373779 AOX1Q06278 1338 aa20.22■□□□□ 0.83
PTPRU-202ENST00000373779 CEBPAP49715 358 aaPredicted RBP20.22■□□□□ 0.83
PTPRU-202ENST00000373779 LRRC2Q9BYS8 371 aa20.22■□□□□ 0.83
PTPRU-202ENST00000373779 LRP2BPQ9P2M1 347 aa20.22■□□□□ 0.83
PTPRU-202ENST00000373779 IFIT5Q13325 482 aaKnown RBP20.22■□□□□ 0.83
PTPRU-202ENST00000373779 MYOM2P54296 1465 aa20.22■□□□□ 0.83
PTPRU-202ENST00000373779 PLA2R1Q13018 1463 aa20.22■□□□□ 0.83
PTPRU-202ENST00000373779 NAPBQ9H115 298 aa20.21■□□□□ 0.83
PTPRU-202ENST00000373779 PREX2Q70Z35 1606 aa20.21■□□□□ 0.83
PTPRU-202ENST00000373779 NPHP3Q7Z494 1330 aa20.21■□□□□ 0.83
PTPRU-202ENST00000373779 AKAP4Q5JQC9 854 aa20.21■□□□□ 0.83
PTPRU-202ENST00000373779 FSD2A1L4K1 749 aa20.21■□□□□ 0.83
PTPRU-202ENST00000373779 SKILP12757 684 aa20.21■□□□□ 0.83
PTPRU-202ENST00000373779 ANKRD24Q8TF21 1146 aa20.21■□□□□ 0.83
PTPRU-202ENST00000373779 MCMDC2Q4G0Z9 681 aa20.21■□□□□ 0.83
PTPRU-202ENST00000373779 JARID2Q92833 1246 aaPredicted RBP20.21■□□□□ 0.83
PTPRU-202ENST00000373779 PHAXQ9H814 394 aaKnown RBP20.21■□□□□ 0.83
PTPRU-202ENST00000373779 GOLGA8AA7E2F4 631 aa20.21■□□□□ 0.83
PTPRU-202ENST00000373779 SLC12A7Q9Y666 1083 aa20.21■□□□□ 0.83
PTPRU-202ENST00000373779 ANKRD13DQ6ZTN6 518 aa20.2■□□□□ 0.82
PTPRU-202ENST00000373779 ZHX1Q9UKY1 873 aaPredicted RBP20.2■□□□□ 0.82
PTPRU-202ENST00000373779 CCDC196A0A1B0GTZ2 297 aa20.2■□□□□ 0.82
PTPRU-202ENST00000373779 HAND2P61296 217 aa20.2■□□□□ 0.82
PTPRU-202ENST00000373779 RAI14Q9P0K7 980 aa20.2■□□□□ 0.82
PTPRU-202ENST00000373779 MAP3K19Q56UN5 1328 aa20.2■□□□□ 0.82
PTPRU-202ENST00000373779 DEF6Q9H4E7 631 aa20.2■□□□□ 0.82
PTPRU-202ENST00000373779 KIF5CO60282 957 aa20.2■□□□□ 0.82
PTPRU-202ENST00000373779 STARD3NLO95772 234 aa20.2■□□□□ 0.82
PTPRU-202ENST00000373779 PTGS1P23219 599 aa20.2■□□□□ 0.82
PTPRU-202ENST00000373779 CPA1P15085 419 aa20.19■□□□□ 0.82
PTPRU-202ENST00000373779 SSRP1Q08945 709 aaKnown RBP20.19■□□□□ 0.82
PTPRU-202ENST00000373779 KLHL10Q6JEL2 608 aa20.19■□□□□ 0.82
PTPRU-202ENST00000373779 CWC25Q9NXE8 425 aaPredicted RBP20.19■□□□□ 0.82
PTPRU-202ENST00000373779 RAD50Q92878 1312 aa20.19■□□□□ 0.82
PTPRU-202ENST00000373779 SNX14Q9Y5W7 946 aa20.19■□□□□ 0.82
PTPRU-202ENST00000373779 CCDC102AQ96A19 550 aa20.19■□□□□ 0.82
PTPRU-202ENST00000373779 LINS1Q8NG48 757 aa20.19■□□□□ 0.82
PTPRU-202ENST00000373779 NCOA7Q8NI08 942 aa20.19■□□□□ 0.82
PTPRU-202ENST00000373779 MRPS27Q92552 414 aaKnown RBP20.19■□□□□ 0.82
PTPRU-202ENST00000373779 CCDC94Q9BW85 323 aaPredicted RBP20.19■□□□□ 0.82
PTPRU-202ENST00000373779 SNRPA1P09661 255 aaKnown RBP20.18■□□□□ 0.82
PTPRU-202ENST00000373779 IFNL2Q8IZJ0 200 aa20.18■□□□□ 0.82
PTPRU-202ENST00000373779 CCDC181Q5TID7 509 aa20.18■□□□□ 0.82
PTPRU-202ENST00000373779 XAGE3Q8WTP9 111 aa20.18■□□□□ 0.82
PTPRU-202ENST00000373779 SNRKQ9NRH2 765 aa20.18■□□□□ 0.82
PTPRU-202ENST00000373779 H0YHG0 523 aa20.18■□□□□ 0.82
PTPRU-202ENST00000373779 GBP3Q9H0R5 595 aa20.18■□□□□ 0.82
PTPRU-202ENST00000373779 TMEM63CQ9P1W3 806 aa20.18■□□□□ 0.82
PTPRU-202ENST00000373779 KIAA0232Q92628 1395 aa20.17■□□□□ 0.82
PTPRU-202ENST00000373779 KCNG4Q8TDN1 519 aa20.17■□□□□ 0.82
PTPRU-202ENST00000373779 PPP1R9BQ96SB3 815 aa20.17■□□□□ 0.82
PTPRU-202ENST00000373779 ZBTB3Q9H5J0 574 aa20.17■□□□□ 0.82
PTPRU-202ENST00000373779 ISM2Q6H9L7 571 aa20.17■□□□□ 0.82
PTPRU-202ENST00000373779 IQCEQ6IPM2 695 aa20.17■□□□□ 0.82
PTPRU-202ENST00000373779 PNMA6EA0A0J9YXQ4 647 aa20.17■□□□□ 0.82
PTPRU-202ENST00000373779 IFIT3O14879 490 aaKnown RBP20.17■□□□□ 0.82
PTPRU-202ENST00000373779 BRD1O95696 1058 aa20.17■□□□□ 0.82
PTPRU-202ENST00000373779 RAB11FIP4Q86YS3 637 aa20.17■□□□□ 0.82
PTPRU-202ENST00000373779 SGSM2O43147 1006 aa20.16■□□□□ 0.82
PTPRU-202ENST00000373779 IARSP41252 1262 aaKnown RBP20.16■□□□□ 0.82
PTPRU-202ENST00000373779 TERF1P54274 439 aa20.16■□□□□ 0.82
PTPRU-202ENST00000373779 AOPEPQ8N6M6 819 aa20.16■□□□□ 0.82
PTPRU-202ENST00000373779 CCDC148Q8NFR7 591 aa20.16■□□□□ 0.82
PTPRU-202ENST00000373779 IGHMBP2P38935 993 aaKnown RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms