RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 TMEM87AQ8NBN3 555 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 EXOC1Q9NV70 894 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 WDHD1O75717 1129 aaPredicted RBP10.61□□□□□ -0.71
VPS13A-203ENST00000360280 KRT13P13646 458 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 PPP1R9BQ96SB3 815 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 CEP126Q9P2H0 1117 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 A0A1B0GUL7 405 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 CCDC94Q9BW85 323 aaPredicted RBP10.61□□□□□ -0.71
VPS13A-203ENST00000360280 TMX1Q9H3N1 280 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 MCM6Q14566 821 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 A6NNZ2 444 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 IGHMBP2P38935 993 aaKnown RBP10.61□□□□□ -0.71
VPS13A-203ENST00000360280 ZNF165P49910 485 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 TUBB8Q3ZCM7 444 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 FERMT3Q86UX7 667 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 MX1P20591 662 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 CIB2O75838 187 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 CPLX3Q8WVH0 158 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 FSIP1Q8NA03 581 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 ABTB2Q8N961 1025 aa10.61□□□□□ -0.71
VPS13A-203ENST00000360280 CCDC144CPQ8IYA2 1237 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 CABP4P57796 275 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 KIF1BPQ96EK5 621 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 MKNK2Q9HBH9 465 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 TATP17735 454 aaPredicted RBP10.6□□□□□ -0.71
VPS13A-203ENST00000360280 LMNTD2Q8IXW0 634 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 ZSCAN16Q9H4T2 348 aaPredicted RBP10.6□□□□□ -0.71
VPS13A-203ENST00000360280 GSTA5Q7RTV2 222 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 EHBP1L1Q8N3D4 1523 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 SMARCA4P51532 1647 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 LMBR1Q8WVP7 490 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 NLRP6P59044 892 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 TSNAXIP1Q2TAA8 658 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 RBM42Q9BTD8 480 aaKnown RBP10.6□□□□□ -0.71
VPS13A-203ENST00000360280 CATIPQ7Z7H3 387 aa10.6□□□□□ -0.71
VPS13A-203ENST00000360280 ERCC6LQ2NKX8 1250 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 FMNL3Q8IVF7 1028 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.59□□□□□ -0.71
VPS13A-203ENST00000360280 GGNBP2Q9H3C7 697 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 LIMCH1Q9UPQ0 1083 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 STX6O43752 255 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 CNGA1P29973 690 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 FYB2Q5VWT5 728 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 FAM76AQ8TAV0 307 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 NUF2Q9BZD4 464 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 INTS8Q75QN2 995 aaKnown RBP10.59□□□□□ -0.71
VPS13A-203ENST00000360280 TRIM47Q96LD4 638 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 KLHL40Q2TBA0 621 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 PUF60Q9UHX1 559 aaKnown RBP10.59□□□□□ -0.71
VPS13A-203ENST00000360280 VPS18Q9P253 973 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 SPG7Q9UQ90 795 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 PPFIA2O75334 1257 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 ANKRD30BQ9BXX2 1392 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 ZEB2O60315 1214 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 GOLGA8BA8MQT2 603 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 TSGA10Q9BZW7 698 aa10.59□□□□□ -0.71
VPS13A-203ENST00000360280 AKR1B10O60218 316 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 MYL6BP14649 208 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 PHLDB2Q86SQ0 1253 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 SUDS3Q9H7L9 328 aaPredicted RBP10.58□□□□□ -0.72
VPS13A-203ENST00000360280 BUB1BO60566 1050 aaPredicted RBP10.58□□□□□ -0.72
VPS13A-203ENST00000360280 KRT83P78385 493 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 SATB1Q01826 763 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 DAPK1P53355 1430 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 ARID4AP29374 1257 aaPredicted RBP10.58□□□□□ -0.72
VPS13A-203ENST00000360280 CAVIN4Q5BKX8 364 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 MTRF1LQ9UGC7 380 aaKnown RBP10.58□□□□□ -0.72
VPS13A-203ENST00000360280 POTEDQ86YR6 584 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 SELENOSQ9BQE4 189 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 CRACR2BQ8N4Y2 399 aaPredicted RBP10.58□□□□□ -0.72
VPS13A-203ENST00000360280 MPHOSPH6Q99547 160 aaKnown RBP10.58□□□□□ -0.72
VPS13A-203ENST00000360280 MROH2BQ7Z745 1585 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 BCAR3O75815 825 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 VAV2P52735 878 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 UBASH3AP57075 661 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 RBM28Q9NW13 759 aaKnown RBP10.58□□□□□ -0.72
VPS13A-203ENST00000360280 ZNF652Q9Y2D9 606 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 PPP2R1AP30153 589 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 RFC1P35251 1148 aaPredicted RBP10.58□□□□□ -0.72
VPS13A-203ENST00000360280 NEDD9Q14511 834 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 ABCF2Q9UG63 623 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 LRRC9Q6ZRR7 1453 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 SEC62Q99442 399 aaKnown RBP10.58□□□□□ -0.72
VPS13A-203ENST00000360280 CEP85LQ5SZL2 805 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 FAM135AQ9P2D6 1515 aa10.58□□□□□ -0.72
VPS13A-203ENST00000360280 ZNF526Q8TF50 670 aaPredicted RBP10.57□□□□□ -0.72
VPS13A-203ENST00000360280 BTBD11A6QL63 1104 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 BMP15O95972 392 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 SLF2Q8IX21 1173 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 TTC36A6NLP5 189 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 TNPO1Q92973 898 aaKnown RBP10.57□□□□□ -0.72
VPS13A-203ENST00000360280 MINDY4BA8MYZ0 360 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 SPAG1Q07617 926 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 ZBTB17Q13105 803 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 ZSWIM4Q9H7M6 989 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 PCK1P35558 622 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 CCDC102BQ68D86 513 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 PRPF40BQ6NWY9 871 aaKnown RBP10.57□□□□□ -0.72
VPS13A-203ENST00000360280 TSR2Q969E8 191 aaKnown RBP10.57□□□□□ -0.72
VPS13A-203ENST00000360280 SPAG5Q96R06 1193 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms