RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 POLR3DP05423 398 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 METTL14Q9HCE5 456 aaKnown RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 CT47A1Q5JQC4 288 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 ZGPATQ8N5A5 531 aaKnown RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 RP1P56715 2156 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 DOCK1Q14185 1865 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 CTAGE5O15320 804 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 SRCIN1Q9C0H9 1055 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 NUP205Q92621 2012 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 UBA5Q9GZZ9 404 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 VAT1LQ9HCJ6 419 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 HDAC1Q13547 482 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 WWC2Q6AWC2 1192 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 TCP11Q8WWU5 503 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 THOC1Q96FV9 657 aaKnown RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 KRT24Q2M2I5 525 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 PKD2Q13563 968 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 SCN1AP35498 2009 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 NSD2O96028 1365 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 MYBL1P10243 752 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 RFX8Q6ZV50 586 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 ARGLU1Q9NWB6 273 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 PCDHB15Q9Y5E8 787 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 SULF1Q8IWU6 871 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 EEF2KMTQ96G04 330 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 BSDC1Q9NW68 430 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 CPSF2Q9P2I0 782 aaKnown RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 MAST1Q9Y2H9 1570 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 CWC27Q6UX04 472 aaKnown RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 SREK1Q8WXA9 508 aaKnown RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 CFAP53Q96M91 514 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 URI1O94763 535 aaPredicted RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 ZRSR2Q15696 482 aaKnown RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 NSFL1CQ9UNZ2 370 aaKnown RBP4.12□□□□□ -1.75
SYNE1-201ENST00000341594 DAPK1P53355 1430 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 ARMC3Q5W041 872 aa4.12□□□□□ -1.75
SYNE1-201ENST00000341594 SETD1AO15047 1707 aaKnown RBP4.11□□□□□ -1.75
SYNE1-201ENST00000341594 SHTN1A0MZ66 631 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 NEXNQ0ZGT2 675 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 USP48Q86UV5 1035 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 UPP2O95045 317 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 POTEB2H3BUK9 544 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 CXorf38Q8TB03 319 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 SMIM5Q71RC9 77 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 NAT10Q9H0A0 1025 aaKnown RBP4.11□□□□□ -1.75
SYNE1-201ENST00000341594 RPSAP08865 295 aaKnown RBP4.11□□□□□ -1.75
SYNE1-201ENST00000341594 EXOSC9Q06265 439 aaKnown RBP4.11□□□□□ -1.75
SYNE1-201ENST00000341594 CCDC196A0A1B0GTZ2 297 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 CCDC91Q7Z6B0 441 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 TBC1D32Q96NH3 1257 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 TET3O43151 1660 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 CLTCL1P53675 1640 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 ASXL1Q8IXJ9 1541 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 DMTNQ08495 405 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 COL9A2Q14055 689 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-201ENST00000341594 SAMD9LQ8IVG5 1584 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 ENO4A6NNW6 628 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 ACTN3Q08043 901 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-201ENST00000341594 TSPY2A6NKD2 308 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 TSPY3P0CV98 308 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 TSPY8P0CW00 308 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 TSPY1Q01534 308 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 KLHL10Q6JEL2 608 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-201ENST00000341594 DNAJC5BQ9UF47 199 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 P3H4Q92791 437 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 SFI1A8K8P3 1242 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 TSPY26PQ9H489 355 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 TP53BP1Q12888 1972 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-201ENST00000341594 KIAA0753Q2KHM9 967 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 SNRNP27Q8WVK2 155 aaKnown RBP4.11□□□□□ -1.75
SYNE1-201ENST00000341594 MYO7AQ13402 2215 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 TMEM110-MUSTN1A8MSY1 372 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 SPTLC3Q9NUV7 552 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 SCN2AQ99250 2005 aa4.11□□□□□ -1.75
SYNE1-201ENST00000341594 RHOXF2BP0C7M4 288 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 TNPO1Q92973 898 aaKnown RBP4.1□□□□□ -1.75
SYNE1-201ENST00000341594 RHOXF2Q9BQY4 288 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 SGSM1Q2NKQ1 1148 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 MMRN2Q9H8L6 949 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 WDR62O43379 1518 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 SORBS3O60504 671 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 UBE4AQ14139 1066 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 ANO2Q9NQ90 1003 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 JADE2Q9NQC1 790 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 hCG_1642624A0A1W2PR95 340 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 RIPK4P57078 832 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 UNC13BO14795 1591 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 KIF3CO14782 793 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 CNPY2Q9Y2B0 182 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 USP47Q96K76 1375 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 URB2Q14146 1524 aaKnown RBP4.1□□□□□ -1.75
SYNE1-201ENST00000341594 ARAP3Q8WWN8 1544 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 LEKR1Q6ZMV7 388 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 TRMT2AQ8IZ69 625 aaKnown RBP4.1□□□□□ -1.75
SYNE1-201ENST00000341594 NLRP3Q96P20 1036 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 RUFY1Q96T51 708 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 CCDC186Q7Z3E2 898 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 CABP2Q9NPB3 220 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 CCDC38Q502W7 563 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms