RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 SLC30A9Q6PML9 568 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 RABGGTAQ92696 567 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 SOS1Q07889 1333 aaPredicted RBP4.78□□□□□ -1.64
NEDD4-201ENST00000338963 PTPRGP23470 1445 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 AFAP1L1Q8TED9 768 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 HNRNPLLQ8WVV9 542 aaKnown RBP4.78□□□□□ -1.64
NEDD4-201ENST00000338963 ZNF428Q96B54 188 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 NRDE2Q9H7Z3 1164 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 TMEM63CQ9P1W3 806 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 UBE2HP62256 183 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 C1QTNF12Q5T7M4 302 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 ZKSCAN2Q63HK3 967 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 TDRD7Q8NHU6 1098 aaKnown RBP4.78□□□□□ -1.64
NEDD4-201ENST00000338963 P3H4Q92791 437 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC114Q96M63 670 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 MPHOSPH8Q99549 860 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 TCHPQ9BT92 498 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 PDRG1Q9NUG6 133 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 RASA3Q14644 834 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 CCDC40Q4G0X9 1142 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 WLSQ5T9L3 541 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 ZSCAN25Q6NSZ9 544 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 GOLGA1Q92805 767 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 CDCA7LQ96GN5 454 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 NAT10Q9H0A0 1025 aaKnown RBP4.78□□□□□ -1.64
NEDD4-201ENST00000338963 SPATA31E1Q6ZUB1 1445 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 IGHDP01880 384 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 RRP12Q5JTH9 1297 aaKnown RBP4.78□□□□□ -1.64
NEDD4-201ENST00000338963 INTS3Q68E01 1043 aaKnown RBP4.78□□□□□ -1.64
NEDD4-201ENST00000338963 TTC19Q6DKK2 380 aaPredicted RBP4.78□□□□□ -1.64
NEDD4-201ENST00000338963 ATP1B4Q9UN42 357 aaPredicted RBP4.78□□□□□ -1.64
NEDD4-201ENST00000338963 DAAM1Q9Y4D1 1078 aa4.78□□□□□ -1.64
NEDD4-201ENST00000338963 ABLIM1O14639 778 aa4.78□□□□□ -1.65
NEDD4-201ENST00000338963 ENOX2Q16206 610 aaKnown RBP4.78□□□□□ -1.65
NEDD4-201ENST00000338963 CC2D1AQ6P1N0 951 aaPredicted RBP4.78□□□□□ -1.65
NEDD4-201ENST00000338963 SPC24Q8NBT2 197 aa4.78□□□□□ -1.65
NEDD4-201ENST00000338963 MICAL1Q8TDZ2 1067 aa4.78□□□□□ -1.65
NEDD4-201ENST00000338963 JPH2Q9BR39 696 aaPredicted RBP4.78□□□□□ -1.65
NEDD4-201ENST00000338963 POLR3CQ9BUI4 534 aaPredicted RBP4.78□□□□□ -1.65
NEDD4-201ENST00000338963 IMPACTQ9P2X3 320 aa4.78□□□□□ -1.65
NEDD4-201ENST00000338963 EIF4G1Q04637 1599 aaKnown RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 SRRM3A6NNA2 597 aaPredicted RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 VDRP11473 427 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 SKILP12757 684 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 TPP2P29144 1249 aaPredicted RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 DEUP1Q05D60 604 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 PRPF4BQ13523 1007 aaKnown RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 SLC4A8Q2Y0W8 1093 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 NUGGCQ68CJ6 796 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 DDX46Q7L014 1031 aaKnown RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 YTHDF3Q7Z739 585 aaKnown RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC65Q8IXS2 484 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 FAM81AQ8TBF8 368 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 ZNF483Q8TF39 744 aaPredicted RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 FAXDC2Q96IV6 333 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 VIPAS39Q9H9C1 493 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 DDX19AQ9NUU7 478 aaKnown RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 BLOC1S6Q9UL45 172 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 ERICH2A1L162 156 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 TPD52L2O43399 206 aaKnown RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 RTN3O95197 1032 aaPredicted RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 GCLCP48506 637 aaPredicted RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 LAMB3Q13751 1172 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 GNL2Q13823 731 aaKnown RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC70Q6NSX1 233 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 SPATA21Q7Z572 469 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 HOMER1Q86YM7 354 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 PROCA1Q8NCQ7 364 aaPredicted RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 TRIM58Q8NG06 486 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC102AQ96A19 550 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 ZNHIT6Q9NWK9 470 aaKnown RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 ENO4A6NNW6 628 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 FAM177BA6PVY3 158 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 GJA8P48165 433 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 GORABQ5T7V8 394 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 DYDC1Q8WWB3 177 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 VPS18Q9P253 973 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 NPHP1O15259 732 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 ZNF75DP51815 510 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 NYAP1Q6ZVC0 841 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 SMCR8Q8TEV9 937 aaPredicted RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 BICD1Q96G01 975 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 UNC45AQ9H3U1 944 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 SUN2Q9UH99 717 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 FSBPO95073 299 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 BRD1O95696 1058 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 MAP3K11Q16584 847 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 CAPRIN2Q6IMN6 1127 aaKnown RBP4.77□□□□□ -1.65
NEDD4-201ENST00000338963 ZNF280DQ6N043 979 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 AGAP3Q96P47 875 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 SLC24A3Q9HC58 644 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 WDR37Q9Y2I8 494 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 ATP8A1Q9Y2Q0 1164 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 CHMP3Q9Y3E7 222 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 PCDHGA4Q9Y5G9 962 aa4.77□□□□□ -1.65
NEDD4-201ENST00000338963 IGF1RP08069 1367 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 RPAP1Q9BWH6 1393 aaPredicted RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 H7C1W4 665 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 HSPA4P34932 840 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms