RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 CREB3L3Q68CJ9 461 aa26.28■■□□□ 1.8
SHMT1-201ENST00000316694 ANKRD24Q8TF21 1146 aa26.28■■□□□ 1.8
SHMT1-201ENST00000316694 EAF2Q96CJ1 260 aaPredicted RBP26.28■■□□□ 1.8
SHMT1-201ENST00000316694 ZNF830Q96NB3 372 aaPredicted RBP26.28■■□□□ 1.8
SHMT1-201ENST00000316694 SIL1Q9H173 461 aa26.28■■□□□ 1.8
SHMT1-201ENST00000316694 PDCL3Q9H2J4 239 aa26.28■■□□□ 1.8
SHMT1-201ENST00000316694 SASH1O94885 1247 aa26.28■■□□□ 1.8
SHMT1-201ENST00000316694 ADCY5O95622 1261 aa26.28■■□□□ 1.8
SHMT1-201ENST00000316694 ST3GAL1Q11201 340 aa26.28■■□□□ 1.8
SHMT1-201ENST00000316694 GIMAP6Q6P9H5 292 aa26.28■■□□□ 1.8
SHMT1-201ENST00000316694 LINS1Q8NG48 757 aa26.27■■□□□ 1.8
SHMT1-201ENST00000316694 KCNB2Q92953 911 aa26.27■■□□□ 1.8
SHMT1-201ENST00000316694 KAZALD1Q96I82 304 aa26.27■■□□□ 1.8
SHMT1-201ENST00000316694 FAM13BQ9NYF5 915 aa26.27■■□□□ 1.8
SHMT1-201ENST00000316694 TLR7Q9NYK1 1049 aaKnown RBP26.26■■□□□ 1.79
SHMT1-201ENST00000316694 PLCB2Q00722 1185 aa26.26■■□□□ 1.79
SHMT1-201ENST00000316694 TPCN1Q9ULQ1 816 aa26.26■■□□□ 1.79
SHMT1-201ENST00000316694 BOLA2Q9H3K6 86 aa26.25■■□□□ 1.79
SHMT1-201ENST00000316694 NCAPD2Q15021 1401 aa26.25■■□□□ 1.79
SHMT1-201ENST00000316694 DDX58O95786 925 aaKnown RBP26.24■■□□□ 1.79
SHMT1-201ENST00000316694 COL9A3Q14050 684 aaPredicted RBP26.24■■□□□ 1.79
SHMT1-201ENST00000316694 MAP4K1Q92918 833 aa26.24■■□□□ 1.79
SHMT1-201ENST00000316694 HIP1O00291 1037 aa26.24■■□□□ 1.79
SHMT1-201ENST00000316694 TCEANC2Q96MN5 208 aa26.24■■□□□ 1.79
SHMT1-201ENST00000316694 FSD1Q9BTV5 496 aa26.24■■□□□ 1.79
SHMT1-201ENST00000316694 DNTTIP2Q5QJE6 756 aaKnown RBP26.23■■□□□ 1.79
SHMT1-201ENST00000316694 KLHDC4Q8TBB5 520 aa26.23■■□□□ 1.79
SHMT1-201ENST00000316694 HEG1Q9ULI3 1381 aa26.23■■□□□ 1.79
SHMT1-201ENST00000316694 PHRF1Q9P1Y6 1649 aaKnown RBP26.23■■□□□ 1.79
SHMT1-201ENST00000316694 A0A0D9SFI3 127 aa26.23■■□□□ 1.79
SHMT1-201ENST00000316694 SLC27A2O14975 620 aa26.23■■□□□ 1.79
SHMT1-201ENST00000316694 LARP1BQ659C4 914 aaKnown RBP26.23■■□□□ 1.79
SHMT1-201ENST00000316694 SASS6Q6UVJ0 657 aa26.23■■□□□ 1.79
SHMT1-201ENST00000316694 TTC12Q9H892 705 aaPredicted RBP26.22■■□□□ 1.79
SHMT1-201ENST00000316694 FERMT3Q86UX7 667 aa26.22■■□□□ 1.79
SHMT1-201ENST00000316694 VSIG10Q8N0Z9 540 aa26.22■■□□□ 1.79
SHMT1-201ENST00000316694 PSMA5P28066 241 aa26.21■■□□□ 1.79
SHMT1-201ENST00000316694 RIC3Q7Z5B4 369 aa26.21■■□□□ 1.79
SHMT1-201ENST00000316694 DDX21Q9NR30 783 aaKnown RBP eCLIP26.21■■□□□ 1.79
SHMT1-201ENST00000316694 KDM4AO75164 1064 aa26.21■■□□□ 1.79
SHMT1-201ENST00000316694 FUCA2Q9BTY2 467 aa26.2■■□□□ 1.78
SHMT1-201ENST00000316694 CHMP3Q9Y3E7 222 aa26.2■■□□□ 1.78
SHMT1-201ENST00000316694 UTYO14607 1347 aa26.19■■□□□ 1.78
SHMT1-201ENST00000316694 MYL6BP14649 208 aa26.19■■□□□ 1.78
SHMT1-201ENST00000316694 BLOC1S2Q6QNY1 142 aa26.19■■□□□ 1.78
SHMT1-201ENST00000316694 CDC37L1Q7L3B6 337 aa26.19■■□□□ 1.78
SHMT1-201ENST00000316694 OVOS2A0A0G2JMS6 1433 aa26.19■■□□□ 1.78
SHMT1-201ENST00000316694 IGKV5-2P06315 115 aa26.19■■□□□ 1.78
SHMT1-201ENST00000316694 RNF20Q5VTR2 975 aa26.19■■□□□ 1.78
SHMT1-201ENST00000316694 FAM173BQ6P4H8 233 aa26.19■■□□□ 1.78
SHMT1-201ENST00000316694 KRT28Q7Z3Y7 464 aa26.19■■□□□ 1.78
SHMT1-201ENST00000316694 TAF6LQ9Y6J9 622 aa26.19■■□□□ 1.78
SHMT1-201ENST00000316694 ZC3H6P61129 1189 aaKnown RBP26.18■■□□□ 1.78
SHMT1-201ENST00000316694 SLC39A6Q13433 755 aa26.18■■□□□ 1.78
SHMT1-201ENST00000316694 PDIA6Q15084 440 aa26.18■■□□□ 1.78
SHMT1-201ENST00000316694 ZNF142P52746 1687 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-201ENST00000316694 NPHP4O75161 1426 aaPredicted RBP26.17■■□□□ 1.78
SHMT1-201ENST00000316694 KRT85P78386 507 aa26.17■■□□□ 1.78
SHMT1-201ENST00000316694 C17orf53Q8N3J3 647 aaPredicted RBP26.17■■□□□ 1.78
SHMT1-201ENST00000316694 PIBF1Q8WXW3 757 aa26.17■■□□□ 1.78
SHMT1-201ENST00000316694 SLIT3O75094 1523 aa26.17■■□□□ 1.78
SHMT1-201ENST00000316694 TTC6Q86TZ1 520 aa26.16■■□□□ 1.78
SHMT1-201ENST00000316694 NEXNQ0ZGT2 675 aa26.16■■□□□ 1.78
SHMT1-201ENST00000316694 ZNF589Q86UQ0 364 aaPredicted RBP26.16■■□□□ 1.78
SHMT1-201ENST00000316694 RGPD5Q99666 1765 aa26.16■■□□□ 1.78
SHMT1-201ENST00000316694 DYNC1I1O14576 645 aa26.15■■□□□ 1.78
SHMT1-201ENST00000316694 EDC3Q96F86 508 aaKnown RBP26.15■■□□□ 1.78
SHMT1-201ENST00000316694 STK3Q13188 491 aa26.15■■□□□ 1.78
SHMT1-201ENST00000316694 NOLC1Q14978 699 aaKnown RBP eCLIP26.15■■□□□ 1.78
SHMT1-201ENST00000316694 LARP1Q6PKG0 1096 aaKnown RBP26.15■■□□□ 1.78
SHMT1-201ENST00000316694 RPS6KB1P23443 525 aa26.14■■□□□ 1.78
SHMT1-201ENST00000316694 ANKRD1Q15327 319 aa26.14■■□□□ 1.78
SHMT1-201ENST00000316694 SNRKQ9NRH2 765 aa26.14■■□□□ 1.78
SHMT1-201ENST00000316694 CCDC192P0DO97 292 aa26.14■■□□□ 1.77
SHMT1-201ENST00000316694 PDCP20941 246 aa26.14■■□□□ 1.77
SHMT1-201ENST00000316694 NEURL1BA8MQ27 555 aa26.13■■□□□ 1.77
SHMT1-201ENST00000316694 AP5Z1O43299 807 aa26.13■■□□□ 1.77
SHMT1-201ENST00000316694 CAMK4Q16566 473 aa26.13■■□□□ 1.77
SHMT1-201ENST00000316694 EPHA10Q5JZY3 1008 aa26.13■■□□□ 1.77
SHMT1-201ENST00000316694 MED23Q9ULK4 1368 aa26.13■■□□□ 1.77
SHMT1-201ENST00000316694 PROSER2Q86WR7 435 aaPredicted RBP26.13■■□□□ 1.77
SHMT1-201ENST00000316694 JARID2Q92833 1246 aaPredicted RBP26.13■■□□□ 1.77
SHMT1-201ENST00000316694 MYD88Q99836 296 aa26.13■■□□□ 1.77
SHMT1-201ENST00000316694 TOB2Q14106 344 aaPredicted RBP26.12■■□□□ 1.77
SHMT1-201ENST00000316694 ZNF790Q6PG37 636 aa26.12■■□□□ 1.77
SHMT1-201ENST00000316694 XAGE3Q8WTP9 111 aa26.12■■□□□ 1.77
SHMT1-201ENST00000316694 GCKRQ14397 625 aa26.12■■□□□ 1.77
SHMT1-201ENST00000316694 SIPA1L3O60292 1781 aaPredicted RBP26.12■■□□□ 1.77
SHMT1-201ENST00000316694 LIG1P18858 919 aa26.11■■□□□ 1.77
SHMT1-201ENST00000316694 COPS6Q7L5N1 327 aa26.11■■□□□ 1.77
SHMT1-201ENST00000316694 ERBB3P21860 1342 aa26.11■■□□□ 1.77
SHMT1-201ENST00000316694 NUP62CLQ9H1M0 184 aa26.1■■□□□ 1.77
SHMT1-201ENST00000316694 TFIP11Q9UBB9 837 aaKnown RBP26.1■■□□□ 1.77
SHMT1-201ENST00000316694 SPC24Q8NBT2 197 aa26.1■■□□□ 1.77
SHMT1-201ENST00000316694 MAP7D2Q96T17 732 aa26.1■■□□□ 1.77
SHMT1-201ENST00000316694 NDUFB9Q9Y6M9 179 aa26.1■■□□□ 1.77
SHMT1-201ENST00000316694 MAP3K11Q16584 847 aa26.09■■□□□ 1.77
SHMT1-201ENST00000316694 DDX17Q92841 729 aaKnown RBP26.09■■□□□ 1.77
SHMT1-201ENST00000316694 TRPM3Q9HCF6 1732 aaPredicted RBP26.09■■□□□ 1.77
SHMT1-201ENST00000316694 GOLGA6L4A6NEF3 574 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms