RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 DDX21Q9NR30 783 aaKnown RBP eCLIP25.42■■□□□ 1.66
LIME1-201ENST00000309546 CHPF2Q9P2E5 772 aa25.42■■□□□ 1.66
LIME1-201ENST00000309546 FKBP4Q02790 459 aaKnown RBP eCLIP25.41■■□□□ 1.661e-6■■□□□ 11.7
LIME1-201ENST00000309546 MBIPQ9NS73 344 aa25.41■■□□□ 1.66
LIME1-201ENST00000309546 FSTL1Q12841 308 aa25.4■■□□□ 1.66
LIME1-201ENST00000309546 UTP14AQ9BVJ6 771 aaKnown RBP25.4■■□□□ 1.66
LIME1-201ENST00000309546 HSP90AB3PQ58FF7 597 aa25.39■■□□□ 1.66
LIME1-201ENST00000309546 RTKN2Q8IZC4 609 aa25.39■■□□□ 1.66
LIME1-201ENST00000309546 SMC1BQ8NDV3 1235 aa25.39■■□□□ 1.66
LIME1-201ENST00000309546 ZNF277Q9NRM2 450 aaPredicted RBP25.39■■□□□ 1.66
LIME1-201ENST00000309546 HOXB7P09629 217 aa25.38■■□□□ 1.65
LIME1-201ENST00000309546 DUSP27Q5VZP5 1158 aa25.38■■□□□ 1.65
LIME1-201ENST00000309546 C3orf67Q6ZVT6 689 aa25.38■■□□□ 1.65
LIME1-201ENST00000309546 LAMB2P55268 1798 aa25.37■■□□□ 1.65
LIME1-201ENST00000309546 CCDC184Q52MB2 194 aa25.37■■□□□ 1.65
LIME1-201ENST00000309546 RBM17Q96I25 401 aaKnown RBP25.37■■□□□ 1.65
LIME1-201ENST00000309546 DDNO94850 711 aaPredicted RBP25.36■■□□□ 1.65
LIME1-201ENST00000309546 CALD1Q05682 793 aaKnown RBP25.36■■□□□ 1.65
LIME1-201ENST00000309546 NLRP3Q96P20 1036 aa25.36■■□□□ 1.65
LIME1-201ENST00000309546 IFT57Q9NWB7 429 aa25.36■■□□□ 1.65
LIME1-201ENST00000309546 POTECB2RU33 542 aa25.35■■□□□ 1.65
LIME1-201ENST00000309546 TCERG1O14776 1098 aaKnown RBP25.35■■□□□ 1.65
LIME1-201ENST00000309546 HOXA10P31260 410 aaPredicted RBP25.35■■□□□ 1.65
LIME1-201ENST00000309546 GNAI1P63096 354 aa25.35■■□□□ 1.65
LIME1-201ENST00000309546 TCIRG1Q13488 830 aa25.35■■□□□ 1.65
LIME1-201ENST00000309546 NLRP10Q86W26 655 aa25.35■■□□□ 1.65
LIME1-201ENST00000309546 ZNF428Q96B54 188 aa25.35■■□□□ 1.65
LIME1-201ENST00000309546 DBF4Q9UBU7 674 aaPredicted RBP25.35■■□□□ 1.65
LIME1-201ENST00000309546 PPEF1O14829 653 aaPredicted RBP25.34■■□□□ 1.65
LIME1-201ENST00000309546 ZNF853P0CG23 659 aa25.34■■□□□ 1.65
LIME1-201ENST00000309546 SYNE4Q8N205 404 aa25.34■■□□□ 1.65
LIME1-201ENST00000309546 IARSP41252 1262 aaKnown RBP25.33■■□□□ 1.65
LIME1-201ENST00000309546 SNED1Q8TER0 1413 aa25.33■■□□□ 1.65
LIME1-201ENST00000309546 CRAMP1Q96RY5 1269 aa25.33■■□□□ 1.65
LIME1-201ENST00000309546 RNF123Q5XPI4 1314 aa25.33■■□□□ 1.64
LIME1-201ENST00000309546 ZNF316A6NFI3 1004 aaPredicted RBP25.32■■□□□ 1.64
LIME1-201ENST00000309546 ELL2O00472 640 aaPredicted RBP25.32■■□□□ 1.64
LIME1-201ENST00000309546 HTRA3P83110 453 aa25.32■■□□□ 1.64
LIME1-201ENST00000309546 SLC51AQ86UW1 340 aa25.32■■□□□ 1.64
LIME1-201ENST00000309546 PLBD2Q8NHP8 589 aa25.32■■□□□ 1.64
LIME1-201ENST00000309546 TRMT112Q9UI30 125 aaKnown RBP25.32■■□□□ 1.64
LIME1-201ENST00000309546 ZNF541Q9H0D2 1346 aa25.32■■□□□ 1.64
LIME1-201ENST00000309546 HCLS1P14317 486 aaPredicted RBP25.31■■□□□ 1.64
LIME1-201ENST00000309546 SLC10A5Q5PT55 438 aa25.31■■□□□ 1.64
LIME1-201ENST00000309546 CC2D2BQ6DHV5 1058 aa25.31■■□□□ 1.64
LIME1-201ENST00000309546 HYPKQ9NX55 129 aa25.31■■□□□ 1.64
LIME1-201ENST00000309546 SH3TC1Q8TE82 1336 aa25.31■■□□□ 1.64
LIME1-201ENST00000309546 ANKRD13DQ6ZTN6 518 aa25.3■■□□□ 1.64
LIME1-201ENST00000309546 PSMD1Q99460 953 aa25.3■■□□□ 1.64
LIME1-201ENST00000309546 SCN4AP35499 1836 aa25.29■■□□□ 1.64
LIME1-201ENST00000309546 ABCC4O15439 1325 aa25.29■■□□□ 1.64
LIME1-201ENST00000309546 DDX60Q8IY21 1712 aaKnown RBP25.29■■□□□ 1.64
LIME1-201ENST00000309546 ANP32CO43423 234 aa25.28■■□□□ 1.64
LIME1-201ENST00000309546 TMX4Q9H1E5 349 aaPredicted RBP25.28■■□□□ 1.64
LIME1-201ENST00000309546 ATP5J2-PTCD1G3V325 749 aa25.27■■□□□ 1.64
LIME1-201ENST00000309546 JDP2Q8WYK2 163 aa25.27■■□□□ 1.64
LIME1-201ENST00000309546 MRS2Q9HD23 443 aa25.27■■□□□ 1.64
LIME1-201ENST00000309546 TAF1P21675 1872 aa25.26■■□□□ 1.63
LIME1-201ENST00000309546 IQCA1LA6NCM1 817 aa25.26■■□□□ 1.63
LIME1-201ENST00000309546 COL4A5P29400 1685 aa25.26■■□□□ 1.63
LIME1-201ENST00000309546 GOLGA2Q08379 1002 aa25.25■■□□□ 1.63
LIME1-201ENST00000309546 GRIPAP1Q4V328 841 aa25.25■■□□□ 1.63
LIME1-201ENST00000309546 DNAJC5GQ8N7S2 189 aa25.25■■□□□ 1.63
LIME1-201ENST00000309546 C8orf58Q8NAV2 365 aa25.25■■□□□ 1.63
LIME1-201ENST00000309546 L3MBTL3Q96JM7 780 aaPredicted RBP25.25■■□□□ 1.63
LIME1-201ENST00000309546 ISCA1Q9BUE6 129 aa25.25■■□□□ 1.63
LIME1-201ENST00000309546 PHAXQ9H814 394 aaKnown RBP25.25■■□□□ 1.63
LIME1-201ENST00000309546 FZD9O00144 591 aa25.24■■□□□ 1.63
LIME1-201ENST00000309546 POTEIP0CG38 1075 aa25.24■■□□□ 1.63
LIME1-201ENST00000309546 POTEJP0CG39 1038 aa25.24■■□□□ 1.63
LIME1-201ENST00000309546 DDX46Q7L014 1031 aaKnown RBP25.24■■□□□ 1.63
LIME1-201ENST00000309546 RIC3Q7Z5B4 369 aa25.24■■□□□ 1.63
LIME1-201ENST00000309546 LARGE2Q8N3Y3 721 aa25.24■■□□□ 1.63
LIME1-201ENST00000309546 ATP6V0A2Q9Y487 856 aa25.24■■□□□ 1.63
LIME1-201ENST00000309546 RTL5Q5HYW3 569 aaPredicted RBP25.23■■□□□ 1.63
LIME1-201ENST00000309546 TSR2Q969E8 191 aaKnown RBP25.23■■□□□ 1.63
LIME1-201ENST00000309546 FAM89AQ96GI7 184 aa25.23■■□□□ 1.63
LIME1-201ENST00000309546 CHADLQ6NUI6 762 aa25.22■■□□□ 1.63
LIME1-201ENST00000309546 EIF6P56537 245 aaKnown RBP25.21■■□□□ 1.63
LIME1-201ENST00000309546 TAF1DQ9H5J8 278 aaPredicted RBP25.21■■□□□ 1.63
LIME1-201ENST00000309546 HACL1Q9UJ83 578 aa25.21■■□□□ 1.63
LIME1-201ENST00000309546 PPIP5K2O43314 1243 aa25.2■■□□□ 1.62
LIME1-201ENST00000309546 BBOX1O75936 387 aa25.2■■□□□ 1.62
LIME1-201ENST00000309546 GRAPQ13588 217 aa25.2■■□□□ 1.62
LIME1-201ENST00000309546 EAPPQ56P03 285 aaPredicted RBP25.2■■□□□ 1.62
LIME1-201ENST00000309546 TSPYL6Q8N831 410 aa25.2■■□□□ 1.62
LIME1-201ENST00000309546 GRAPLQ8TC17 118 aaPredicted RBP25.2■■□□□ 1.62
LIME1-201ENST00000309546 KLRG1Q96E93 195 aa25.2■■□□□ 1.62
LIME1-201ENST00000309546 GJA3Q9Y6H8 435 aa25.2■■□□□ 1.62
LIME1-201ENST00000309546 AOC3Q16853 763 aa25.19■■□□□ 1.62
LIME1-201ENST00000309546 CCDC27Q2M243 656 aa25.19■■□□□ 1.62
LIME1-201ENST00000309546 CCDC30Q5VVM6 783 aa25.19■■□□□ 1.62
LIME1-201ENST00000309546 WWC1Q8IX03 1113 aa25.19■■□□□ 1.62
LIME1-201ENST00000309546 NIM1KQ8IY84 436 aa25.19■■□□□ 1.62
LIME1-201ENST00000309546 GPC2Q8N158 579 aa25.19■■□□□ 1.62
LIME1-201ENST00000309546 MYD88Q99836 296 aa25.19■■□□□ 1.62
LIME1-201ENST00000309546 DPP8Q6V1X1 898 aaPredicted RBP25.18■■□□□ 1.62
LIME1-201ENST00000309546 LDHDQ86WU2 507 aa25.18■■□□□ 1.62
LIME1-201ENST00000309546 SP8Q8IXZ3 490 aa25.18■■□□□ 1.62
LIME1-201ENST00000309546 EPHX2P34913 555 aa25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms