RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 BRIP1Q9BX63 1249 aa22.68■■□□□ 1.22
SSSCA1-201ENST00000309328 TRMT112Q9UI30 125 aaKnown RBP22.68■■□□□ 1.22
SSSCA1-201ENST00000309328 ARFGEF2Q9Y6D5 1785 aa22.68■■□□□ 1.22
SSSCA1-201ENST00000309328 RIC1Q4ADV7 1423 aa22.67■■□□□ 1.22
SSSCA1-201ENST00000309328 SH3TC1Q8TE82 1336 aa22.67■■□□□ 1.22
SSSCA1-201ENST00000309328 NEURL1BA8MQ27 555 aa22.67■■□□□ 1.22
SSSCA1-201ENST00000309328 ATP5J2-PTCD1G3V325 749 aa22.67■■□□□ 1.22
SSSCA1-201ENST00000309328 NTSR2O95665 410 aa22.67■■□□□ 1.22
SSSCA1-201ENST00000309328 BEND3Q5T5X7 828 aa22.67■■□□□ 1.22
SSSCA1-201ENST00000309328 SUSD4Q5VX71 490 aa22.67■■□□□ 1.22
SSSCA1-201ENST00000309328 SRCIN1Q9C0H9 1055 aa22.67■■□□□ 1.22
SSSCA1-201ENST00000309328 NRXN2Q9P2S2 1712 aa22.66■■□□□ 1.22
SSSCA1-201ENST00000309328 F6X3S4 739 aa22.66■■□□□ 1.22
SSSCA1-201ENST00000309328 IGKV5-2P06315 115 aa22.66■■□□□ 1.22
SSSCA1-201ENST00000309328 PDE6BP35913 854 aa22.66■■□□□ 1.22
SSSCA1-201ENST00000309328 TGFB2P61812 414 aa22.66■■□□□ 1.22
SSSCA1-201ENST00000309328 SLC4A10Q6U841 1118 aa22.66■■□□□ 1.22
SSSCA1-201ENST00000309328 ZBTB38Q8NAP3 1195 aaPredicted RBP22.66■■□□□ 1.22
SSSCA1-201ENST00000309328 FRAT1Q92837 279 aaPredicted RBP22.66■■□□□ 1.22
SSSCA1-201ENST00000309328 ANKRD36CQ5JPF3 1778 aa22.66■■□□□ 1.22
SSSCA1-201ENST00000309328 PCCAP05165 728 aaPredicted RBP22.64■■□□□ 1.21
SSSCA1-201ENST00000309328 GCKRQ14397 625 aa22.64■■□□□ 1.21
SSSCA1-201ENST00000309328 SLC10A5Q5PT55 438 aa22.64■■□□□ 1.21
SSSCA1-201ENST00000309328 ABCC4O15439 1325 aa22.63■■□□□ 1.21
SSSCA1-201ENST00000309328 TRIM27P14373 513 aa22.63■■□□□ 1.21
SSSCA1-201ENST00000309328 FTSJ3Q8IY81 847 aaKnown RBP22.63■■□□□ 1.21
SSSCA1-201ENST00000309328 FHDC1Q9C0D6 1143 aaPredicted RBP22.63■■□□□ 1.21
SSSCA1-201ENST00000309328 FAM177BA6PVY3 158 aa22.62■■□□□ 1.21
SSSCA1-201ENST00000309328 CWF19L2Q2TBE0 894 aaKnown RBP22.62■■□□□ 1.21
SSSCA1-201ENST00000309328 HDAC5Q9UQL6 1122 aa22.62■■□□□ 1.21
SSSCA1-201ENST00000309328 CDHR2Q9BYE9 1310 aa22.61■■□□□ 1.21
SSSCA1-201ENST00000309328 KLRG2A4D1S0 409 aaPredicted RBP22.6■■□□□ 1.21
SSSCA1-201ENST00000309328 ERFEQ4G0M1 354 aa22.6■■□□□ 1.21
SSSCA1-201ENST00000309328 INTS3Q68E01 1043 aaKnown RBP22.6■■□□□ 1.21
SSSCA1-201ENST00000309328 NUTM1Q86Y26 1132 aa22.6■■□□□ 1.21
SSSCA1-201ENST00000309328 KLHL34Q8N239 644 aa22.6■■□□□ 1.21
SSSCA1-201ENST00000309328 NLRP3Q96P20 1036 aa22.6■■□□□ 1.21
SSSCA1-201ENST00000309328 C9orf78Q9NZ63 289 aaPredicted RBP22.6■■□□□ 1.21
SSSCA1-201ENST00000309328 H0YIN7 160 aa22.59■■□□□ 1.21
SSSCA1-201ENST00000309328 H7C1W4 665 aa22.59■■□□□ 1.21
SSSCA1-201ENST00000309328 GRM8O00222 908 aa22.59■■□□□ 1.21
SSSCA1-201ENST00000309328 DZIP1LQ8IYY4 767 aaKnown RBP22.59■■□□□ 1.21
SSSCA1-201ENST00000309328 SYT17Q9BSW7 474 aa22.59■■□□□ 1.21
SSSCA1-201ENST00000309328 IRS4O14654 1257 aaPredicted RBP22.58■■□□□ 1.21
SSSCA1-201ENST00000309328 FAM89AQ96GI7 184 aa22.58■■□□□ 1.21
SSSCA1-201ENST00000309328 ABCC12Q96J65 1359 aa22.57■■□□□ 1.2
SSSCA1-201ENST00000309328 AFDNP55196 1824 aaKnown RBP22.57■■□□□ 1.2
SSSCA1-201ENST00000309328 UTYO14607 1347 aa22.57■■□□□ 1.2
SSSCA1-201ENST00000309328 PDE8AO60658 829 aa22.56■■□□□ 1.2
SSSCA1-201ENST00000309328 PDE3AQ14432 1141 aa22.56■■□□□ 1.2
SSSCA1-201ENST00000309328 CRY2Q49AN0 593 aa22.56■■□□□ 1.2
SSSCA1-201ENST00000309328 UBE3BQ7Z3V4 1068 aa22.56■■□□□ 1.2
SSSCA1-201ENST00000309328 PLA2G12BQ9BX93 195 aa22.56■■□□□ 1.2
SSSCA1-201ENST00000309328 CHMP4BQ9H444 224 aaKnown RBP22.56■■□□□ 1.2
SSSCA1-201ENST00000309328 KIF13BQ9NQT8 1826 aa22.56■■□□□ 1.2
SSSCA1-201ENST00000309328 NPR1P16066 1061 aa22.55■■□□□ 1.2
SSSCA1-201ENST00000309328 C2CD5Q86YS7 1000 aa22.55■■□□□ 1.2
SSSCA1-201ENST00000309328 STYK1Q6J9G0 422 aa22.54■■□□□ 1.2
SSSCA1-201ENST00000309328 RPGRQ92834 1020 aaKnown RBP22.54■■□□□ 1.2
SSSCA1-201ENST00000309328 MASTLQ96GX5 879 aa22.54■■□□□ 1.2
SSSCA1-201ENST00000309328 GNAI3P08754 354 aa22.53■■□□□ 1.2
SSSCA1-201ENST00000309328 SRGNP10124 158 aa22.53■■□□□ 1.2
SSSCA1-201ENST00000309328 HCLS1P14317 486 aaPredicted RBP22.53■■□□□ 1.2
SSSCA1-201ENST00000309328 CASP7P55210 303 aa22.53■■□□□ 1.2
SSSCA1-201ENST00000309328 SF3B3Q15393 1217 aaKnown RBP22.53■■□□□ 1.2
SSSCA1-201ENST00000309328 CNKSR1Q969H4 720 aa22.53■■□□□ 1.2
SSSCA1-201ENST00000309328 CLUAP1Q96AJ1 413 aa22.53■■□□□ 1.2
SSSCA1-201ENST00000309328 DPEP1P16444 411 aa22.52■■□□□ 1.2
SSSCA1-201ENST00000309328 ALDH1B1P30837 517 aa22.52■■□□□ 1.2
SSSCA1-201ENST00000309328 HOXA10P31260 410 aaPredicted RBP22.52■■□□□ 1.2
SSSCA1-201ENST00000309328 CCDC152Q4G0S7 254 aa22.52■■□□□ 1.2
SSSCA1-201ENST00000309328 RBM17Q96I25 401 aaKnown RBP22.52■■□□□ 1.2
SSSCA1-201ENST00000309328 PIM2Q9P1W9 311 aa22.52■■□□□ 1.2
SSSCA1-201ENST00000309328 RTL5Q5HYW3 569 aaPredicted RBP22.51■■□□□ 1.19
SSSCA1-201ENST00000309328 CCDC24Q8N4L8 307 aa22.51■■□□□ 1.19
SSSCA1-201ENST00000309328 USP44Q9H0E7 712 aa22.51■■□□□ 1.19
SSSCA1-201ENST00000309328 N4BP2Q86UW6 1770 aaPredicted RBP22.5■■□□□ 1.19
SSSCA1-201ENST00000309328 UBTFL1P0CB47 393 aaPredicted RBP22.5■■□□□ 1.19
SSSCA1-201ENST00000309328 RRP1P56182 461 aaKnown RBP22.5■■□□□ 1.19
SSSCA1-201ENST00000309328 CTSWP56202 376 aa22.5■■□□□ 1.19
SSSCA1-201ENST00000309328 TMEM57Q8N5G2 664 aa22.5■■□□□ 1.19
SSSCA1-201ENST00000309328 NLGN2Q8NFZ4 835 aa22.5■■□□□ 1.19
SSSCA1-201ENST00000309328 A0A0G2JLW4 131 aa22.49■■□□□ 1.19
SSSCA1-201ENST00000309328 DDX46Q7L014 1031 aaKnown RBP22.49■■□□□ 1.19
SSSCA1-201ENST00000309328 ITPRIPQ8IWB1 547 aa22.49■■□□□ 1.19
SSSCA1-201ENST00000309328 SYNE4Q8N205 404 aa22.49■■□□□ 1.19
SSSCA1-201ENST00000309328 TTLL6Q8N841 843 aa22.49■■□□□ 1.19
SSSCA1-201ENST00000309328 CRAMP1Q96RY5 1269 aa22.49■■□□□ 1.19
SSSCA1-201ENST00000309328 RTL9Q8NET4 1388 aa22.49■■□□□ 1.19
SSSCA1-201ENST00000309328 DCAF8L1A6NGE4 600 aa22.48■■□□□ 1.19
SSSCA1-201ENST00000309328 NBPF7P0C2Y1 421 aaPredicted RBP22.48■■□□□ 1.19
SSSCA1-201ENST00000309328 CHRNA5P30532 468 aa22.48■■□□□ 1.19
SSSCA1-201ENST00000309328 DALRD3Q5D0E6 543 aaKnown RBP22.48■■□□□ 1.19
SSSCA1-201ENST00000309328 TMC4Q7Z404 712 aa22.48■■□□□ 1.19
SSSCA1-201ENST00000309328 DDX19BQ9UMR2 479 aa22.48■■□□□ 1.19
SSSCA1-201ENST00000309328 KCNA3P22001 575 aa22.47■■□□□ 1.19
SSSCA1-201ENST00000309328 ZNF622Q969S3 477 aaKnown RBP eCLIP22.47■■□□□ 1.19
SSSCA1-201ENST00000309328 LAMB2P55268 1798 aa22.46■■□□□ 1.19
SSSCA1-201ENST00000309328 CENPBP07199 599 aaPredicted RBP22.46■■□□□ 1.19
SSSCA1-201ENST00000309328 RLBP1P12271 317 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms