RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 ABHD8Q96I13 439 aa27.4■■□□□ 1.98
SMCO4-201ENST00000298966 U2AF1L5P0DN76 240 aaPredicted RBP27.39■■□□□ 1.98
SMCO4-201ENST00000298966 PRKAR2BP31323 418 aa27.39■■□□□ 1.98
SMCO4-201ENST00000298966 U2AF1Q01081 240 aaKnown RBP eCLIP27.39■■□□□ 1.98
SMCO4-201ENST00000298966 PHACTR3Q96KR7 559 aa27.39■■□□□ 1.98
SMCO4-201ENST00000298966 RUNDC1Q96C34 613 aa27.38■■□□□ 1.97
SMCO4-201ENST00000298966 RTF1Q92541 710 aaKnown RBP27.37■■□□□ 1.97
SMCO4-201ENST00000298966 LMOD1P29536 600 aaPredicted RBP27.36■■□□□ 1.97
SMCO4-201ENST00000298966 EIF6P56537 245 aaKnown RBP27.36■■□□□ 1.97
SMCO4-201ENST00000298966 PSMD1Q99460 953 aa27.36■■□□□ 1.97
SMCO4-201ENST00000298966 DDX21Q9NR30 783 aaKnown RBP eCLIP27.36■■□□□ 1.97
SMCO4-201ENST00000298966 GJA3Q9Y6H8 435 aa27.36■■□□□ 1.97
SMCO4-201ENST00000298966 NBPF26B4DH59 902 aa27.35■■□□□ 1.97
SMCO4-201ENST00000298966 NBPF10Q6P3W6 841 aaKnown RBP27.35■■□□□ 1.97
SMCO4-201ENST00000298966 NBPF15Q8N660 670 aa27.35■■□□□ 1.97
SMCO4-201ENST00000298966 RSPH6AQ9H0K4 717 aa27.35■■□□□ 1.97
SMCO4-201ENST00000298966 CC2D2BQ6DHV5 1058 aa27.34■■□□□ 1.97
SMCO4-201ENST00000298966 SLC34A2O95436 690 aa27.33■■□□□ 1.97
SMCO4-201ENST00000298966 BEGAINQ9BUH8 593 aa27.33■■□□□ 1.97
SMCO4-201ENST00000298966 NEFMP07197 916 aa27.32■■□□□ 1.96
SMCO4-201ENST00000298966 ECE1P42892 770 aa27.32■■□□□ 1.96
SMCO4-201ENST00000298966 HLFQ16534 295 aa27.32■■□□□ 1.96
SMCO4-201ENST00000298966 FAM161AQ3B820 660 aa27.32■■□□□ 1.96
SMCO4-201ENST00000298966 PAXIP1Q6ZW49 1069 aaPredicted RBP27.32■■□□□ 1.96
SMCO4-201ENST00000298966 MCM10Q7L590 875 aa27.32■■□□□ 1.96
SMCO4-201ENST00000298966 NYXQ9GZU5 481 aa27.32■■□□□ 1.96
SMCO4-201ENST00000298966 CAPNS2Q96L46 248 aa27.31■■□□□ 1.96
SMCO4-201ENST00000298966 SNED1Q8TER0 1413 aa27.31■■□□□ 1.96
SMCO4-201ENST00000298966 CRY2Q49AN0 593 aa27.3■■□□□ 1.96
SMCO4-201ENST00000298966 TRPM7Q96QT4 1865 aa27.3■■□□□ 1.96
SMCO4-201ENST00000298966 THSD7BQ9C0I4 1608 aa27.29■■□□□ 1.96
SMCO4-201ENST00000298966 LTBP1Q14766 1721 aa27.28■■□□□ 1.96
SMCO4-201ENST00000298966 ABCC12Q96J65 1359 aa27.28■■□□□ 1.96
SMCO4-201ENST00000298966 MAPK8IP3Q9UPT6 1336 aa27.28■■□□□ 1.96
SMCO4-201ENST00000298966 GRIPAP1Q4V328 841 aa27.28■■□□□ 1.96
SMCO4-201ENST00000298966 LARGE2Q8N3Y3 721 aa27.28■■□□□ 1.96
SMCO4-201ENST00000298966 RPGRQ92834 1020 aaKnown RBP27.28■■□□□ 1.96
SMCO4-201ENST00000298966 GRM1Q13255 1194 aa27.27■■□□□ 1.96
SMCO4-201ENST00000298966 NUTM1Q86Y26 1132 aa27.27■■□□□ 1.96
SMCO4-201ENST00000298966 COL4A5P29400 1685 aa27.27■■□□□ 1.96
SMCO4-201ENST00000298966 NUP98P52948 1817 aa27.26■■□□□ 1.95
SMCO4-201ENST00000298966 EPS15P42566 896 aa27.26■■□□□ 1.95
SMCO4-201ENST00000298966 SCNN1DP51172 638 aa27.26■■□□□ 1.95
SMCO4-201ENST00000298966 CYP4F22Q6NT55 531 aa27.26■■□□□ 1.95
SMCO4-201ENST00000298966 USP50Q70EL3 339 aaPredicted RBP27.26■■□□□ 1.95
SMCO4-201ENST00000298966 CCDC146Q8IYE0 955 aa27.26■■□□□ 1.95
SMCO4-201ENST00000298966 GPR101Q96P66 508 aaPredicted RBP27.26■■□□□ 1.95
SMCO4-201ENST00000298966 LAMB4A4D0S4 1761 aa27.26■■□□□ 1.95
SMCO4-201ENST00000298966 CCDC85CA6NKD9 419 aa27.25■■□□□ 1.95
SMCO4-201ENST00000298966 APAF1O14727 1248 aa27.25■■□□□ 1.95
SMCO4-201ENST00000298966 FMR1Q06787 632 aaKnown RBP eCLIP27.25■■□□□ 1.95
SMCO4-201ENST00000298966 DCTN1Q14203 1278 aa27.25■■□□□ 1.95
SMCO4-201ENST00000298966 PLEKHF1Q96S99 279 aa27.25■■□□□ 1.95
SMCO4-201ENST00000298966 ERVV-1B6SEH8 477 aa27.24■■□□□ 1.95
SMCO4-201ENST00000298966 HTATSF1O43719 755 aaKnown RBP27.24■■□□□ 1.95
SMCO4-201ENST00000298966 HOXA10P31260 410 aaPredicted RBP27.24■■□□□ 1.95
SMCO4-201ENST00000298966 TAF7Q15545 349 aaPredicted RBP27.24■■□□□ 1.95
SMCO4-201ENST00000298966 CCDC27Q2M243 656 aa27.24■■□□□ 1.95
SMCO4-201ENST00000298966 MLLT1Q03111 559 aaPredicted RBP27.23■■□□□ 1.95
SMCO4-201ENST00000298966 NIM1KQ8IY84 436 aa27.22■■□□□ 1.95
SMCO4-201ENST00000298966 RBM17Q96I25 401 aaKnown RBP27.22■■□□□ 1.95
SMCO4-201ENST00000298966 TLL2Q9Y6L7 1015 aa27.22■■□□□ 1.95
SMCO4-201ENST00000298966 RIC1Q4ADV7 1423 aa27.22■■□□□ 1.95
SMCO4-201ENST00000298966 MAP3K15Q6ZN16 1313 aa27.21■■□□□ 1.95
SMCO4-201ENST00000298966 TRAF5O00463 557 aa27.21■■□□□ 1.95
SMCO4-201ENST00000298966 CST9Q5W186 159 aa27.21■■□□□ 1.95
SMCO4-201ENST00000298966 KIF6Q6ZMV9 814 aa27.21■■□□□ 1.95
SMCO4-201ENST00000298966 ZNF521Q96K83 1311 aa27.2■■□□□ 1.95
SMCO4-201ENST00000298966 PPEF1O14829 653 aaPredicted RBP27.2■■□□□ 1.94
SMCO4-201ENST00000298966 MAP2K2P36507 400 aa27.2■■□□□ 1.94
SMCO4-201ENST00000298966 CRAMP1Q96RY5 1269 aa27.2■■□□□ 1.94
SMCO4-201ENST00000298966 IBTKQ9P2D0 1353 aaPredicted RBP27.2■■□□□ 1.94
SMCO4-201ENST00000298966 TCERG1O14776 1098 aaKnown RBP27.19■■□□□ 1.94
SMCO4-201ENST00000298966 GPTP24298 496 aa27.19■■□□□ 1.94
SMCO4-201ENST00000298966 TMX4Q9H1E5 349 aaPredicted RBP27.19■■□□□ 1.94
SMCO4-201ENST00000298966 PPIP5K2O43314 1243 aa27.18■■□□□ 1.94
SMCO4-201ENST00000298966 RGS19P49795 217 aa27.18■■□□□ 1.94
SMCO4-201ENST00000298966 ADARB2Q9NS39 739 aaKnown RBP27.18■■□□□ 1.94
SMCO4-201ENST00000298966 MIS18AQ9NYP9 233 aa27.18■■□□□ 1.94
SMCO4-201ENST00000298966 RRP7AQ9Y3A4 280 aaKnown RBP27.18■■□□□ 1.94
SMCO4-201ENST00000298966 TSKSQ9UJT2 592 aa27.17■■□□□ 1.94
SMCO4-201ENST00000298966 AOC2O75106 756 aa27.16■■□□□ 1.94
SMCO4-201ENST00000298966 TTLL7Q6ZT98 887 aa27.16■■□□□ 1.94
SMCO4-201ENST00000298966 GPRC5DQ9NZD1 345 aa27.16■■□□□ 1.94
SMCO4-201ENST00000298966 UBN2Q6ZU65 1347 aa27.16■■□□□ 1.94
SMCO4-201ENST00000298966 CA12O43570 354 aa27.15■■□□□ 1.94
SMCO4-201ENST00000298966 GOLGA2Q08379 1002 aa27.15■■□□□ 1.94
SMCO4-201ENST00000298966 SUSD4Q5VX71 490 aa27.15■■□□□ 1.94
SMCO4-201ENST00000298966 VPS33BQ9H267 617 aa27.15■■□□□ 1.94
SMCO4-201ENST00000298966 ZBTB3Q9H5J0 574 aa27.15■■□□□ 1.94
SMCO4-201ENST00000298966 TMPOP42166 694 aaKnown RBP27.14■■□□□ 1.94
SMCO4-201ENST00000298966 KDM3BQ7LBC6 1761 aa27.13■■□□□ 1.93
SMCO4-201ENST00000298966 CELF2O95319 508 aaKnown RBP27.13■■□□□ 1.93
SMCO4-201ENST00000298966 MYL6BP14649 208 aa27.13■■□□□ 1.93
SMCO4-201ENST00000298966 AOC3Q16853 763 aa27.13■■□□□ 1.93
SMCO4-201ENST00000298966 SAPCD2Q86UD0 394 aa27.13■■□□□ 1.93
SMCO4-201ENST00000298966 WDR63Q8IWG1 891 aa27.13■■□□□ 1.93
SMCO4-201ENST00000298966 DLG5Q8TDM6 1919 aa27.12■■□□□ 1.93
SMCO4-201ENST00000298966 LMOD3Q0VAK6 560 aa27.12■■□□□ 1.93
SMCO4-201ENST00000298966 PPP1R42Q7Z4L9 355 aa27.12■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms