RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 GRIN3BO60391 1043 aa8.33□□□□□ -1.08
CD44-204ENST00000279452 NTSR2O95665 410 aa8.33□□□□□ -1.08
CD44-204ENST00000279452 SLC4A10Q6U841 1118 aa8.33□□□□□ -1.08
CD44-204ENST00000279452 KSR2Q6VAB6 950 aa8.33□□□□□ -1.08
CD44-204ENST00000279452 RPGRQ92834 1020 aaKnown RBP8.33□□□□□ -1.08
CD44-204ENST00000279452 NRXN2Q9P2S2 1712 aa8.33□□□□□ -1.08
CD44-204ENST00000279452 AFDNP55196 1824 aaKnown RBP8.33□□□□□ -1.08
CD44-204ENST00000279452 IBTKQ9P2D0 1353 aaPredicted RBP8.33□□□□□ -1.08
CD44-204ENST00000279452 ARFGEF2Q9Y6D5 1785 aa8.33□□□□□ -1.08
CD44-204ENST00000279452 ZBED9Q6R2W3 1325 aa8.32□□□□□ -1.08
CD44-204ENST00000279452 SH3TC1Q8TE82 1336 aa8.32□□□□□ -1.08
CD44-204ENST00000279452 F6X3S4 739 aa8.32□□□□□ -1.08
CD44-204ENST00000279452 HCLS1P14317 486 aaPredicted RBP8.32□□□□□ -1.08
CD44-204ENST00000279452 TTLL6Q8N841 843 aa8.32□□□□□ -1.08
CD44-204ENST00000279452 DNAAF4Q8WXU2 420 aa8.32□□□□□ -1.08
CD44-204ENST00000279452 METTL22Q9BUU2 404 aaPredicted RBP8.32□□□□□ -1.08
CD44-204ENST00000279452 CWC25Q9NXE8 425 aaPredicted RBP8.32□□□□□ -1.08
CD44-204ENST00000279452 PDZRN3Q9UPQ7 1066 aa8.32□□□□□ -1.08
CD44-204ENST00000279452 ADCY9O60503 1353 aa8.32□□□□□ -1.08
CD44-204ENST00000279452 KIF13BQ9NQT8 1826 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 ANKRD36CQ5JPF3 1778 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 NPR1P16066 1061 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 CWF19L2Q2TBE0 894 aaKnown RBP8.31□□□□□ -1.08
CD44-204ENST00000279452 ARHGAP27Q6ZUM4 889 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 SSH1Q8WYL5 1049 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 JARID2Q92833 1246 aaPredicted RBP8.31□□□□□ -1.08
CD44-204ENST00000279452 FAM89AQ96GI7 184 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 MASTLQ96GX5 879 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 NLRP3Q96P20 1036 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 ISCA1Q9BUE6 129 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 RNF216Q9NWF9 866 aaPredicted RBP8.31□□□□□ -1.08
CD44-204ENST00000279452 KIAA1551Q9HCM1 1747 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 NUP98P52948 1817 aa8.31□□□□□ -1.08
CD44-204ENST00000279452 TNRC6CQ9HCJ0 1690 aaKnown RBP8.3□□□□□ -1.08
CD44-204ENST00000279452 RNF123Q5XPI4 1314 aa8.3□□□□□ -1.08
CD44-204ENST00000279452 COL11A2P13942 1736 aaPredicted RBP8.3□□□□□ -1.08
CD44-204ENST00000279452 CT47B1P0C2W7 299 aaPredicted RBP8.3□□□□□ -1.08
CD44-204ENST00000279452 SRGNP10124 158 aa8.3□□□□□ -1.08
CD44-204ENST00000279452 KCNA3P22001 575 aa8.3□□□□□ -1.08
CD44-204ENST00000279452 STYK1Q6J9G0 422 aa8.3□□□□□ -1.08
CD44-204ENST00000279452 PRPF40BQ6NWY9 871 aaKnown RBP8.3□□□□□ -1.08
CD44-204ENST00000279452 SYNE4Q8N205 404 aa8.3□□□□□ -1.08
CD44-204ENST00000279452 MRPL50Q8N5N7 158 aaKnown RBP8.3□□□□□ -1.08
CD44-204ENST00000279452 CCDC191Q8NCU4 936 aa8.3□□□□□ -1.08
CD44-204ENST00000279452 CNKSR1Q969H4 720 aa8.3□□□□□ -1.08
CD44-204ENST00000279452 RBM17Q96I25 401 aaKnown RBP8.3□□□□□ -1.08
CD44-204ENST00000279452 NEURL1BA8MQ27 555 aa8.29□□□□□ -1.08
CD44-204ENST00000279452 IRS4O14654 1257 aaPredicted RBP8.29□□□□□ -1.08
CD44-204ENST00000279452 C21orf2O43822 256 aa8.29□□□□□ -1.08
CD44-204ENST00000279452 HSP90B1P14625 803 aaKnown RBP8.29□□□□□ -1.08
CD44-204ENST00000279452 YY1P25490 414 aa8.29□□□□□ -1.08
CD44-204ENST00000279452 ALDH1L2Q3SY69 923 aa8.29□□□□□ -1.08
CD44-204ENST00000279452 C3orf67Q6ZVT6 689 aa8.29□□□□□ -1.08
CD44-204ENST00000279452 UBE3BQ7Z3V4 1068 aa8.29□□□□□ -1.08
CD44-204ENST00000279452 TRMT2AQ8IZ69 625 aaKnown RBP8.29□□□□□ -1.08
CD44-204ENST00000279452 ZBTB38Q8NAP3 1195 aaPredicted RBP8.29□□□□□ -1.08
CD44-204ENST00000279452 FRAT1Q92837 279 aaPredicted RBP8.29□□□□□ -1.08
CD44-204ENST00000279452 CCDC85AQ96PX6 553 aaPredicted RBP8.29□□□□□ -1.08
CD44-204ENST00000279452 TMX4Q9H1E5 349 aaPredicted RBP8.29□□□□□ -1.08
CD44-204ENST00000279452 ANKRD31Q8N7Z5 1873 aa8.29□□□□□ -1.08
CD44-204ENST00000279452 PTPRCP08575 1304 aa8.29□□□□□ -1.08
CD44-204ENST00000279452 PPEF1O14829 653 aaPredicted RBP8.28□□□□□ -1.08
CD44-204ENST00000279452 PCCAP05165 728 aaPredicted RBP8.28□□□□□ -1.08
CD44-204ENST00000279452 IGKV5-2P06315 115 aa8.28□□□□□ -1.08
CD44-204ENST00000279452 ALDH1B1P30837 517 aa8.28□□□□□ -1.08
CD44-204ENST00000279452 DDX46Q7L014 1031 aaKnown RBP8.28□□□□□ -1.08
CD44-204ENST00000279452 LINS1Q8NG48 757 aa8.28□□□□□ -1.08
CD44-204ENST00000279452 SRCIN1Q9C0H9 1055 aa8.28□□□□□ -1.08
CD44-204ENST00000279452 C9orf78Q9NZ63 289 aaPredicted RBP8.28□□□□□ -1.08
CD44-204ENST00000279452 NOB1Q9ULX3 412 aaKnown RBP8.28□□□□□ -1.08
CD44-204ENST00000279452 RIC1Q4ADV7 1423 aa8.28□□□□□ -1.08
CD44-204ENST00000279452 KIF16BQ96L93 1317 aa8.28□□□□□ -1.08
CD44-204ENST00000279452 DLEC1Q9Y238 1755 aa8.27□□□□□ -1.08
CD44-204ENST00000279452 RARSP54136 660 aaKnown RBP8.27□□□□□ -1.09
CD44-204ENST00000279452 CACNB1Q02641 598 aaPredicted RBP8.27□□□□□ -1.09
CD44-204ENST00000279452 RASSF7Q02833 373 aa8.27□□□□□ -1.09
CD44-204ENST00000279452 TRIM28Q13263 835 aaKnown RBP8.27□□□□□ -1.09
CD44-204ENST00000279452 GCKRQ14397 625 aa8.27□□□□□ -1.09
CD44-204ENST00000279452 CRY2Q49AN0 593 aa8.27□□□□□ -1.09
CD44-204ENST00000279452 CCDC93Q567U6 631 aa8.27□□□□□ -1.09
CD44-204ENST00000279452 SOGA3Q5TF21 947 aa8.27□□□□□ -1.09
CD44-204ENST00000279452 CHMP3Q9Y3E7 222 aa8.27□□□□□ -1.09
CD44-204ENST00000279452 ABCC4O15439 1325 aa8.27□□□□□ -1.09
CD44-204ENST00000279452 KLRG2A4D1S0 409 aaPredicted RBP8.26□□□□□ -1.09
CD44-204ENST00000279452 PDE8AO60658 829 aa8.26□□□□□ -1.09
CD44-204ENST00000279452 CCDC152Q4G0S7 254 aa8.26□□□□□ -1.09
CD44-204ENST00000279452 SLC10A5Q5PT55 438 aa8.26□□□□□ -1.09
CD44-204ENST00000279452 BEND3Q5T5X7 828 aa8.26□□□□□ -1.09
CD44-204ENST00000279452 OLFM4Q6UX06 510 aa8.26□□□□□ -1.09
CD44-204ENST00000279452 API5Q9BZZ5 524 aaKnown RBP8.26□□□□□ -1.09
CD44-204ENST00000279452 RNF181Q9P0P0 153 aa8.26□□□□□ -1.09
CD44-204ENST00000279452 CDHR2Q9BYE9 1310 aa8.26□□□□□ -1.09
CD44-204ENST00000279452 GRM8O00222 908 aa8.25□□□□□ -1.09
CD44-204ENST00000279452 IPO8O15397 1037 aaKnown RBP8.25□□□□□ -1.09
CD44-204ENST00000279452 BCAR3O75815 825 aa8.25□□□□□ -1.09
CD44-204ENST00000279452 ALDH1L1O75891 902 aa8.25□□□□□ -1.09
CD44-204ENST00000279452 CTSWP56202 376 aa8.25□□□□□ -1.09
CD44-204ENST00000279452 GRAPQ13588 217 aa8.25□□□□□ -1.09
CD44-204ENST00000279452 C9orf131Q5VYM1 1079 aa8.25□□□□□ -1.09
CD44-204ENST00000279452 FTSJ3Q8IY81 847 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 162.8 ms