RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 DRC1Q96MC2 740 aa18.63■□□□□ 0.57
CTDSP1-201ENST00000273062 ZSCAN26Q16670 478 aa18.62■□□□□ 0.57
CTDSP1-201ENST00000273062 ARHGEF10O15013 1369 aa18.62■□□□□ 0.57
CTDSP1-201ENST00000273062 MARF1Q9Y4F3 1742 aaKnown RBP18.62■□□□□ 0.57
CTDSP1-201ENST00000273062 APBB1O00213 710 aa18.62■□□□□ 0.57
CTDSP1-201ENST00000273062 GUCY2CP25092 1073 aa18.62■□□□□ 0.57
CTDSP1-201ENST00000273062 UBE2HP62256 183 aa18.62■□□□□ 0.57
CTDSP1-201ENST00000273062 CHL1O00533 1208 aa18.61■□□□□ 0.57
CTDSP1-201ENST00000273062 UPF3BQ9BZI7 483 aaKnown RBP18.61■□□□□ 0.57
CTDSP1-201ENST00000273062 TRMT1Q9NXH9 659 aaKnown RBP18.61■□□□□ 0.57
CTDSP1-201ENST00000273062 HOXC9P31274 260 aa18.6■□□□□ 0.57
CTDSP1-201ENST00000273062 TXLNBQ8N3L3 684 aa18.6■□□□□ 0.57
CTDSP1-201ENST00000273062 ABCC4O15439 1325 aa18.6■□□□□ 0.57
CTDSP1-201ENST00000273062 CRB1P82279 1406 aa18.6■□□□□ 0.57
CTDSP1-201ENST00000273062 NYAP1Q6ZVC0 841 aa18.59■□□□□ 0.57
CTDSP1-201ENST00000273062 SRLQ86TD4 932 aa18.59■□□□□ 0.57
CTDSP1-201ENST00000273062 PACS2Q86VP3 889 aa18.59■□□□□ 0.57
CTDSP1-201ENST00000273062 USHBP1Q8N6Y0 703 aa18.59■□□□□ 0.57
CTDSP1-201ENST00000273062 SYTL4Q96C24 671 aaPredicted RBP18.59■□□□□ 0.57
CTDSP1-201ENST00000273062 PHF8Q9UPP1 1060 aa18.59■□□□□ 0.57
CTDSP1-201ENST00000273062 IGSF1Q8N6C5 1336 aa18.59■□□□□ 0.57
CTDSP1-201ENST00000273062 WDR33Q9C0J8 1336 aaKnown RBP18.59■□□□□ 0.57
CTDSP1-201ENST00000273062 CHD2O14647 1828 aaKnown RBP18.59■□□□□ 0.57
CTDSP1-201ENST00000273062 SLU7O95391 586 aaKnown RBP18.58■□□□□ 0.57
CTDSP1-201ENST00000273062 BANK1Q8NDB2 785 aa18.58■□□□□ 0.57
CTDSP1-201ENST00000273062 FAM200AQ8TCP9 573 aa18.58■□□□□ 0.57
CTDSP1-201ENST00000273062 ARHGAP45Q92619 1136 aa18.58■□□□□ 0.57
CTDSP1-201ENST00000273062 JRKLQ9Y4A0 524 aa18.58■□□□□ 0.57
CTDSP1-201ENST00000273062 CAMK4Q16566 473 aa18.58■□□□□ 0.56
CTDSP1-201ENST00000273062 ESCO1Q5FWF5 840 aa18.58■□□□□ 0.56
CTDSP1-201ENST00000273062 TRIM5Q9C035 493 aa18.58■□□□□ 0.56
CTDSP1-201ENST00000273062 RRP15Q9Y3B9 282 aaKnown RBP18.58■□□□□ 0.56
CTDSP1-201ENST00000273062 CHMP3Q9Y3E7 222 aa18.58■□□□□ 0.56
CTDSP1-201ENST00000273062 MRVI1Q9Y6F6 885 aa18.58■□□□□ 0.56
CTDSP1-201ENST00000273062 KDRP35968 1356 aa18.57■□□□□ 0.56
CTDSP1-201ENST00000273062 PTPN14Q15678 1187 aa18.57■□□□□ 0.56
CTDSP1-201ENST00000273062 SAMD1Q6SPF0 538 aaPredicted RBP18.57■□□□□ 0.56
CTDSP1-201ENST00000273062 INTS4Q96HW7 963 aaKnown RBP18.57■□□□□ 0.56
CTDSP1-201ENST00000273062 ERC2O15083 957 aa18.57■□□□□ 0.56
CTDSP1-201ENST00000273062 ZNF75DP51815 510 aa18.57■□□□□ 0.56
CTDSP1-201ENST00000273062 SEC31AO94979 1220 aaKnown RBP18.56■□□□□ 0.56
CTDSP1-201ENST00000273062 CCDC192P0DO97 292 aa18.56■□□□□ 0.56
CTDSP1-201ENST00000273062 E2F4Q16254 413 aa18.56■□□□□ 0.56
CTDSP1-201ENST00000273062 ADAMTSL3P82987 1691 aa18.56■□□□□ 0.56
CTDSP1-201ENST00000273062 ZNF142P52746 1687 aaPredicted RBP18.56■□□□□ 0.56
CTDSP1-201ENST00000273062 PLA2G4DQ86XP0 818 aa18.56■□□□□ 0.56
CTDSP1-201ENST00000273062 CTR9Q6PD62 1173 aa18.55■□□□□ 0.56
CTDSP1-201ENST00000273062 CBX8Q9HC52 389 aa18.55■□□□□ 0.56
CTDSP1-201ENST00000273062 TEX35Q5T0J7 233 aa18.55■□□□□ 0.56
CTDSP1-201ENST00000273062 CASC1Q6TDU7 716 aa18.55■□□□□ 0.56
CTDSP1-201ENST00000273062 LARP6Q9BRS8 491 aaKnown RBP18.55■□□□□ 0.56
CTDSP1-201ENST00000273062 CLIP2Q9UDT6 1046 aa18.55■□□□□ 0.56
CTDSP1-201ENST00000273062 ZRANB2O95218 330 aaKnown RBP eCLIP18.54■□□□□ 0.56
CTDSP1-201ENST00000273062 AXDND1Q5T1B0 1012 aaPredicted RBP18.54■□□□□ 0.56
CTDSP1-201ENST00000273062 NWD1Q149M9 1564 aa18.54■□□□□ 0.56
CTDSP1-201ENST00000273062 CKAP2LQ8IYA6 745 aa18.54■□□□□ 0.56
CTDSP1-201ENST00000273062 ZNF622Q969S3 477 aaKnown RBP eCLIP18.54■□□□□ 0.56
CTDSP1-201ENST00000273062 ORAI2Q96SN7 254 aa18.54■□□□□ 0.56
CTDSP1-201ENST00000273062 RGS12O14924 1447 aa18.54■□□□□ 0.56
CTDSP1-201ENST00000273062 TYRO3Q06418 890 aa18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 ARHGAP29Q52LW3 1261 aa18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 TSPYL4Q9UJ04 414 aa18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 REXO1L1PQ8IX06 675 aa18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 RAD50Q92878 1312 aa18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 SASH3O75995 380 aa18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 ZSCAN22P10073 491 aaPredicted RBP18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 DNM1Q05193 864 aaKnown RBP18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 ANO6Q4KMQ2 910 aa18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 API5Q9BZZ5 524 aaKnown RBP18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 BRMS1Q9HCU9 246 aa18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 CEP83Q9Y592 693 aa18.53■□□□□ 0.56
CTDSP1-201ENST00000273062 RTL1A6NKG5 1358 aa18.52■□□□□ 0.56
CTDSP1-201ENST00000273062 OAS2P29728 719 aaKnown RBP18.52■□□□□ 0.56
CTDSP1-201ENST00000273062 PSME1Q06323 249 aa18.52■□□□□ 0.56
CTDSP1-201ENST00000273062 TSHZ3Q63HK5 1081 aa18.52■□□□□ 0.56
CTDSP1-201ENST00000273062 LRRC8AQ8IWT6 810 aa18.52■□□□□ 0.56
CTDSP1-201ENST00000273062 DCTPP1Q9H773 170 aa18.52■□□□□ 0.56
CTDSP1-201ENST00000273062 NPHP4O75161 1426 aaPredicted RBP18.52■□□□□ 0.55
CTDSP1-201ENST00000273062 ADGRL3Q9HAR2 1447 aa18.52■□□□□ 0.55
CTDSP1-201ENST00000273062 MCM2P49736 904 aa18.52■□□□□ 0.55
CTDSP1-201ENST00000273062 PLEKHG2Q9H7P9 1386 aa18.51■□□□□ 0.55
CTDSP1-201ENST00000273062 CCDC172P0C7W6 258 aa18.51■□□□□ 0.55
CTDSP1-201ENST00000273062 DNAJC21Q5F1R6 531 aaKnown RBP18.51■□□□□ 0.55
CTDSP1-201ENST00000273062 CCDC171Q6TFL3 1326 aa18.51■□□□□ 0.55
CTDSP1-201ENST00000273062 SLC4A2P04920 1241 aa18.51■□□□□ 0.55
CTDSP1-201ENST00000273062 G2E3Q7L622 706 aa18.51■□□□□ 0.55
CTDSP1-201ENST00000273062 CARD10Q9BWT7 1032 aa18.51■□□□□ 0.55
CTDSP1-201ENST00000273062 KIAA0232Q92628 1395 aa18.5■□□□□ 0.55
CTDSP1-201ENST00000273062 ANKRD65E5RJM6 399 aa18.5■□□□□ 0.55
CTDSP1-201ENST00000273062 HTATSF1O43719 755 aaKnown RBP18.5■□□□□ 0.55
CTDSP1-201ENST00000273062 SYT1P21579 422 aa18.5■□□□□ 0.55
CTDSP1-201ENST00000273062 TPM4P67936 248 aa18.5■□□□□ 0.55
CTDSP1-201ENST00000273062 FOXR1Q6PIV2 292 aa18.5■□□□□ 0.55
CTDSP1-201ENST00000273062 CCDC34Q96HJ3 373 aa18.5■□□□□ 0.55
CTDSP1-201ENST00000273062 SKILP12757 684 aa18.5■□□□□ 0.55
CTDSP1-201ENST00000273062 FBXO18Q8NFZ0 1043 aa18.5■□□□□ 0.55
CTDSP1-201ENST00000273062 NECTIN2Q92692 538 aa18.5■□□□□ 0.55
CTDSP1-201ENST00000273062 ATP2B1P20020 1258 aa18.49■□□□□ 0.55
CTDSP1-201ENST00000273062 TTC31Q49AM3 519 aaPredicted RBP18.49■□□□□ 0.55
CTDSP1-201ENST00000273062 UBXN6Q9BZV1 441 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms