RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CCDC50Q8IVM0 306 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 TBC1D31Q96DN5 1066 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 NOB1Q9ULX3 412 aaKnown RBP15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 MYO1BO43795 1136 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 CCDC117Q8IWD4 279 aaPredicted RBP15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 TRMT1Q9NXH9 659 aaKnown RBP15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 CA8P35219 290 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 CCDC114Q96M63 670 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 EXOC1Q9NV70 894 aa15.89■□□□□ 0.13
CCDC88A-201ENST00000263630 IDH1O75874 414 aaKnown RBP15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 TUBB4AP04350 444 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 SPTY2D1Q68D10 685 aaPredicted RBP15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 ZBTB17Q13105 803 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 TRPC3Q13507 836 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 FAM169AQ9Y6X4 670 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 MYCNP04198 464 aaPredicted RBP15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 GEN1Q17RS7 908 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 HVCN1Q96D96 273 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 SEC62Q99442 399 aaKnown RBP15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 IMPG2Q9BZV3 1241 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 KRT13P13646 458 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 PHLDB2Q86SQ0 1253 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 NAA25Q14CX7 972 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 NCBP1Q09161 790 aaKnown RBP15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 SRRTQ9BXP5 876 aaKnown RBP15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 RAB11FIP3O75154 756 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 ARFGAP2Q8N6H7 521 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 SEPT8Q92599 483 aa15.88■□□□□ 0.13
CCDC88A-201ENST00000263630 SLC4A2P04920 1241 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 NLRP5P59047 1200 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 IL27Q8NEV9 243 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 NACADO15069 1562 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 CTAGE6Q86UF2 777 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 TBCAO75347 108 aaKnown RBP15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 SAMM50Q9Y512 469 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 CUL4BQ13620 913 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 GIPC1O14908 333 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 ERCC5P28715 1186 aaPredicted RBP15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 INTS8Q75QN2 995 aaKnown RBP15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 ERMNQ8TAM6 284 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 HAUS2Q9NVX0 235 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 B4GALNT4Q76KP1 1039 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 C10orf67Q8IYJ2 551 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 NLRP6P59044 892 aa15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 MTRF1LQ9UGC7 380 aaKnown RBP15.87■□□□□ 0.13
CCDC88A-201ENST00000263630 GOLGA8AA7E2F4 631 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 GOLGA8BA8MQT2 603 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 NEDD9Q14511 834 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 WDR78Q5VTH9 848 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 LIG1P18858 919 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 CPLX3Q8WVH0 158 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 CTAGE15A4D2H0 777 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 TUBBP07437 444 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 CTAGE8P0CG41 777 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 RPGRIP1LQ68CZ1 1315 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 CTAGE4Q8IX94 777 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 SELENOSQ9BQE4 189 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 GNG11P61952 73 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 CEP85LQ5SZL2 805 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 SRGAP3O43295 1099 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 FYB2Q5VWT5 728 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 CCDC170Q8IYT3 715 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 ZMYND15Q9H091 742 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 C1orf115Q9H7X2 142 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 ABCF2Q9UG63 623 aa15.86■□□□□ 0.13
CCDC88A-201ENST00000263630 MAK16Q9BXY0 300 aaKnown RBP15.85■□□□□ 0.13
CCDC88A-201ENST00000263630 ERCC3P19447 782 aa15.85■□□□□ 0.13
CCDC88A-201ENST00000263630 TTLL12Q14166 644 aaPredicted RBP15.85■□□□□ 0.13
CCDC88A-201ENST00000263630 TSNAXIP1Q2TAA8 658 aa15.85■□□□□ 0.13
CCDC88A-201ENST00000263630 MINDY4BA8MYZ0 360 aa15.85■□□□□ 0.13
CCDC88A-201ENST00000263630 VCX3AQ9NNX9 186 aa15.85■□□□□ 0.13
CCDC88A-201ENST00000263630 ARHGAP24Q8N264 748 aa15.85■□□□□ 0.13
CCDC88A-201ENST00000263630 PHACTR2O75167 634 aa15.85■□□□□ 0.13
CCDC88A-201ENST00000263630 PCK1P35558 622 aa15.85■□□□□ 0.13
CCDC88A-201ENST00000263630 TRAF1Q13077 416 aa15.85■□□□□ 0.13
CCDC88A-201ENST00000263630 AKR1B10O60218 316 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 MAP3K12Q12852 859 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 A6NNZ2 444 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 CAPN2P17655 700 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 ATP6V1E1P36543 226 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 TUBB8Q3ZCM7 444 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 TSPYL2Q9H2G4 693 aaPredicted RBP15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 TMX1Q9H3N1 280 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 GPR161Q8N6U8 529 aaKnown RBP15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 MYL6BP14649 208 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 TSGA10Q9BZW7 698 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 UBA7P41226 1012 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 MTUS1Q9ULD2 1270 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 HAUS7Q99871 368 aa15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 NOC2LQ9Y3T9 749 aaKnown RBP15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 DDX27Q96GQ7 796 aaKnown RBP15.84■□□□□ 0.13
CCDC88A-201ENST00000263630 ZNF526Q8TF50 670 aaPredicted RBP15.83■□□□□ 0.13
CCDC88A-201ENST00000263630 SDCCAG8Q86SQ7 713 aaPredicted RBP15.83■□□□□ 0.13
CCDC88A-201ENST00000263630 FYCO1Q9BQS8 1478 aa15.83■□□□□ 0.12
CCDC88A-201ENST00000263630 PDE1CQ14123 709 aaPredicted RBP15.83■□□□□ 0.12
CCDC88A-201ENST00000263630 GOLGA1Q92805 767 aa15.83■□□□□ 0.12
CCDC88A-201ENST00000263630 CSRNP2Q9H175 543 aa15.83■□□□□ 0.12
CCDC88A-201ENST00000263630 ZFP91Q96JP5 570 aaPredicted RBP15.83■□□□□ 0.12
CCDC88A-201ENST00000263630 STARD3NLO95772 234 aa15.83■□□□□ 0.12
CCDC88A-201ENST00000263630 MTHFSP49914 203 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms