RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 EID1Q9Y6B2 187 aa16.99■□□□□ 0.31
SDC1-201ENST00000254351 PLEKHG1Q9ULL1 1385 aa16.99■□□□□ 0.31
SDC1-201ENST00000254351 BECN2A8MW95 431 aa16.99■□□□□ 0.31
SDC1-201ENST00000254351 PI4K2BQ8TCG2 481 aa16.99■□□□□ 0.31
SDC1-201ENST00000254351 CCDC9Q9Y3X0 531 aaKnown RBP16.99■□□□□ 0.31
SDC1-201ENST00000254351 C11orf57Q6ZUT1 292 aaPredicted RBP16.98■□□□□ 0.31
SDC1-201ENST00000254351 ARHGEF28Q8N1W1 1705 aaKnown RBP16.98■□□□□ 0.31
SDC1-201ENST00000254351 RBM6P78332 1123 aaKnown RBP16.98■□□□□ 0.31
SDC1-201ENST00000254351 PTPN21Q16825 1174 aa16.98■□□□□ 0.31
SDC1-201ENST00000254351 FAM227BQ96M60 508 aa16.98■□□□□ 0.31
SDC1-201ENST00000254351 TMX1Q9H3N1 280 aa16.98■□□□□ 0.31
SDC1-201ENST00000254351 PAXBP1Q9Y5B6 917 aa16.98■□□□□ 0.31
SDC1-201ENST00000254351 JAK2O60674 1132 aa16.97■□□□□ 0.31
SDC1-201ENST00000254351 NUDT16Q96DE0 195 aaKnown RBP16.97■□□□□ 0.31
SDC1-201ENST00000254351 LRRC2Q9BYS8 371 aa16.97■□□□□ 0.31
SDC1-201ENST00000254351 PA2G4Q9UQ80 394 aaKnown RBP16.97■□□□□ 0.31
SDC1-201ENST00000254351 MAP2P11137 1827 aaKnown RBP16.97■□□□□ 0.31
SDC1-201ENST00000254351 LRRC8AQ8IWT6 810 aa16.97■□□□□ 0.31
SDC1-201ENST00000254351 KIAA0232Q92628 1395 aa16.97■□□□□ 0.31
SDC1-201ENST00000254351 CCDC69A6NI79 296 aa16.96■□□□□ 0.31
SDC1-201ENST00000254351 GABPB1Q06547 395 aaPredicted RBP16.96■□□□□ 0.31
SDC1-201ENST00000254351 MORC2Q9Y6X9 1032 aaPredicted RBP16.96■□□□□ 0.31
SDC1-201ENST00000254351 FAM177A1Q8N128 213 aaPredicted RBP16.96■□□□□ 0.31
SDC1-201ENST00000254351 NUTM2GQ5VZR2 741 aa16.96■□□□□ 0.31
SDC1-201ENST00000254351 ZNF397Q8NF99 534 aaPredicted RBP16.96■□□□□ 0.31
SDC1-201ENST00000254351 TIGD1Q96MW7 591 aa16.96■□□□□ 0.31
SDC1-201ENST00000254351 STAP2Q9UGK3 403 aa16.96■□□□□ 0.31
SDC1-201ENST00000254351 PLA2G4DQ86XP0 818 aa16.95■□□□□ 0.3
SDC1-201ENST00000254351 EPC1Q9H2F5 836 aa16.95■□□□□ 0.3
SDC1-201ENST00000254351 ZKSCAN1P17029 563 aaPredicted RBP16.95■□□□□ 0.3
SDC1-201ENST00000254351 LEO1Q8WVC0 666 aaPredicted RBP16.95■□□□□ 0.3
SDC1-201ENST00000254351 PGBD1Q96JS3 809 aa16.95■□□□□ 0.3
SDC1-201ENST00000254351 TRIM34Q9BYJ4 488 aa16.95■□□□□ 0.3
SDC1-201ENST00000254351 ADAMTS13Q76LX8 1427 aa16.95■□□□□ 0.3
SDC1-201ENST00000254351 GUCY1B3Q02153 619 aa16.94■□□□□ 0.3
SDC1-201ENST00000254351 RBM8AQ9Y5S9 174 aaKnown RBP16.94■□□□□ 0.3
SDC1-201ENST00000254351 CCDC66A2RUB6 948 aa16.94■□□□□ 0.3
SDC1-201ENST00000254351 HSP90B1P14625 803 aaKnown RBP16.94■□□□□ 0.3
SDC1-201ENST00000254351 ISM2Q6H9L7 571 aa16.94■□□□□ 0.3
SDC1-201ENST00000254351 SYT10Q6XYQ8 523 aa16.94■□□□□ 0.3
SDC1-201ENST00000254351 NEK11Q8NG66 645 aa16.94■□□□□ 0.3
SDC1-201ENST00000254351 ZNF446Q9NWS9 450 aa16.94■□□□□ 0.3
SDC1-201ENST00000254351 NOL10Q9BSC4 688 aaKnown RBP16.94■□□□□ 0.3
SDC1-201ENST00000254351 NDUFB9Q9Y6M9 179 aa16.94■□□□□ 0.3
SDC1-201ENST00000254351 H3BQV1 296 aa16.93■□□□□ 0.3
SDC1-201ENST00000254351 IFFO2Q5TF58 517 aa16.93■□□□□ 0.3
SDC1-201ENST00000254351 METP08581 1390 aa16.93■□□□□ 0.3
SDC1-201ENST00000254351 TAF3Q5VWG9 929 aa16.93■□□□□ 0.3
SDC1-201ENST00000254351 SIL1Q9H173 461 aa16.93■□□□□ 0.3
SDC1-201ENST00000254351 CCDC8Q9H0W5 538 aaPredicted RBP16.92■□□□□ 0.3
SDC1-201ENST00000254351 ZCCHC17Q9NP64 241 aaKnown RBP16.92■□□□□ 0.3
SDC1-201ENST00000254351 MAP3K19Q56UN5 1328 aa16.92■□□□□ 0.3
SDC1-201ENST00000254351 TAF7Q15545 349 aaPredicted RBP16.92■□□□□ 0.3
SDC1-201ENST00000254351 CCDC30Q5VVM6 783 aa16.92■□□□□ 0.3
SDC1-201ENST00000254351 HOMER1Q86YM7 354 aa16.92■□□□□ 0.3
SDC1-201ENST00000254351 DLC1Q96QB1 1528 aa16.92■□□□□ 0.3
SDC1-201ENST00000254351 WASLO00401 505 aaPredicted RBP16.92■□□□□ 0.3
SDC1-201ENST00000254351 CHGBP05060 677 aa16.92■□□□□ 0.3
SDC1-201ENST00000254351 IFIT2P09913 472 aaKnown RBP16.92■□□□□ 0.3
SDC1-201ENST00000254351 VPS53Q5VIR6 699 aa16.92■□□□□ 0.3
SDC1-201ENST00000254351 EDC3Q96F86 508 aaKnown RBP16.92■□□□□ 0.3
SDC1-201ENST00000254351 BIN1O00499 593 aa16.91■□□□□ 0.3
SDC1-201ENST00000254351 HDGFL1Q5TGJ6 251 aa16.91■□□□□ 0.3
SDC1-201ENST00000254351 CREB3L3Q68CJ9 461 aa16.91■□□□□ 0.3
SDC1-201ENST00000254351 CLSTN2Q9H4D0 955 aa16.91■□□□□ 0.3
SDC1-201ENST00000254351 DLG5Q8TDM6 1919 aa16.91■□□□□ 0.3
SDC1-201ENST00000254351 HNRNPH2P55795 449 aaKnown RBP16.91■□□□□ 0.3
SDC1-201ENST00000254351 BOLA2Q9H3K6 86 aa16.91■□□□□ 0.3
SDC1-201ENST00000254351 SEC31AO94979 1220 aaKnown RBP16.9■□□□□ 0.3
SDC1-201ENST00000254351 SMC2O95347 1197 aa16.9■□□□□ 0.3
SDC1-201ENST00000254351 CAPN2P17655 700 aa16.9■□□□□ 0.3
SDC1-201ENST00000254351 AOPEPQ8N6M6 819 aa16.9■□□□□ 0.3
SDC1-201ENST00000254351 GYS2P54840 703 aa16.9■□□□□ 0.3
SDC1-201ENST00000254351 USHBP1Q8N6Y0 703 aa16.9■□□□□ 0.3
SDC1-201ENST00000254351 KIF1BPQ96EK5 621 aa16.9■□□□□ 0.3
SDC1-201ENST00000254351 SSH2Q76I76 1423 aa16.9■□□□□ 0.3
SDC1-201ENST00000254351 SLU7O95391 586 aaKnown RBP16.9■□□□□ 0.3
SDC1-201ENST00000254351 ARHGAP29Q52LW3 1261 aa16.9■□□□□ 0.3
SDC1-201ENST00000254351 AACSQ86V21 672 aa16.9■□□□□ 0.3
SDC1-201ENST00000254351 ZSWIM6Q9HCJ5 1215 aa16.9■□□□□ 0.3
SDC1-201ENST00000254351 KDM4FA0A1W2PPD8 638 aa16.89■□□□□ 0.29
SDC1-201ENST00000254351 BLOC1S2Q6QNY1 142 aa16.89■□□□□ 0.29
SDC1-201ENST00000254351 TDRD7Q8NHU6 1098 aaKnown RBP16.89■□□□□ 0.29
SDC1-201ENST00000254351 BRF1Q92994 677 aa16.89■□□□□ 0.29
SDC1-201ENST00000254351 SCAND2PQ9GZW5 306 aaPredicted RBP16.89■□□□□ 0.29
SDC1-201ENST00000254351 DIP2AQ14689 1571 aa16.89■□□□□ 0.29
SDC1-201ENST00000254351 NMIQ13287 307 aaPredicted RBP16.89■□□□□ 0.29
SDC1-201ENST00000254351 CCDC34Q96HJ3 373 aa16.89■□□□□ 0.29
SDC1-201ENST00000254351 SH2B1Q9NRF2 756 aaPredicted RBP16.89■□□□□ 0.29
SDC1-201ENST00000254351 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.89■□□□□ 0.29
SDC1-201ENST00000254351 GOLGA8FQ08AF8 430 aa16.88■□□□□ 0.29
SDC1-201ENST00000254351 GOLGA8DPQ0D2H9 430 aa16.88■□□□□ 0.29
SDC1-201ENST00000254351 ANKLE2Q86XL3 938 aa16.88■□□□□ 0.29
SDC1-201ENST00000254351 DDX19AQ9NUU7 478 aaKnown RBP16.88■□□□□ 0.29
SDC1-201ENST00000254351 CCDC61Q9Y6R9 512 aa16.88■□□□□ 0.29
SDC1-201ENST00000254351 TECPR2O15040 1411 aa16.88■□□□□ 0.29
SDC1-201ENST00000254351 PI4KAP2A4QPH2 592 aa16.88■□□□□ 0.29
SDC1-201ENST00000254351 SNW1Q13573 536 aaKnown RBP16.88■□□□□ 0.29
SDC1-201ENST00000254351 CLASRPQ8N2M8 674 aaKnown RBP16.88■□□□□ 0.29
SDC1-201ENST00000254351 PI4KAP1Q8N8J0 262 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms