RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 NUTM1Q86Y26 1132 aa18.28■□□□□ 0.52
CCDC47-201ENST00000225726 USP42Q9H9J4 1324 aaKnown RBP18.28■□□□□ 0.52
CCDC47-201ENST00000225726 KCNQ2O43526 872 aa18.28■□□□□ 0.52
CCDC47-201ENST00000225726 HSP90AB3PQ58FF7 597 aa18.28■□□□□ 0.52
CCDC47-201ENST00000225726 CLASRPQ8N2M8 674 aaKnown RBP18.28■□□□□ 0.52
CCDC47-201ENST00000225726 CCDC87Q9NVE4 849 aa18.28■□□□□ 0.52
CCDC47-201ENST00000225726 NHSQ6T4R5 1651 aa18.28■□□□□ 0.52
CCDC47-201ENST00000225726 COL5A3P25940 1745 aaPredicted RBP18.28■□□□□ 0.52
CCDC47-201ENST00000225726 FOXO4P98177 505 aa18.28■□□□□ 0.52
CCDC47-201ENST00000225726 GJD4Q96KN9 370 aaPredicted RBP18.28■□□□□ 0.52
CCDC47-201ENST00000225726 COPRSQ9NQ92 184 aa18.28■□□□□ 0.52
CCDC47-201ENST00000225726 RFX5P48382 616 aaPredicted RBP18.27■□□□□ 0.52
CCDC47-201ENST00000225726 TSHZ3Q63HK5 1081 aa18.27■□□□□ 0.52
CCDC47-201ENST00000225726 ERVV-1B6SEH8 477 aa18.26■□□□□ 0.51
CCDC47-201ENST00000225726 INTS5Q6P9B9 1019 aaKnown RBP18.26■□□□□ 0.51
CCDC47-201ENST00000225726 IL27Q8NEV9 243 aa18.26■□□□□ 0.51
CCDC47-201ENST00000225726 CRKLP46109 303 aaKnown RBP18.26■□□□□ 0.51
CCDC47-201ENST00000225726 NUP98P52948 1817 aa18.26■□□□□ 0.51
CCDC47-201ENST00000225726 RBM25P49756 843 aaKnown RBP18.25■□□□□ 0.51
CCDC47-201ENST00000225726 ITPK1Q13572 414 aa18.25■□□□□ 0.51
CCDC47-201ENST00000225726 ARXQ96QS3 562 aa18.25■□□□□ 0.51
CCDC47-201ENST00000225726 TTC41PQ6P2S7 1318 aa18.25■□□□□ 0.51
CCDC47-201ENST00000225726 SASH1O94885 1247 aa18.25■□□□□ 0.51
CCDC47-201ENST00000225726 PCCAP05165 728 aaPredicted RBP18.25■□□□□ 0.51
CCDC47-201ENST00000225726 EIF5P55010 431 aaKnown RBP18.25■□□□□ 0.51
CCDC47-201ENST00000225726 LMBR1LQ6UX01 489 aa18.25■□□□□ 0.51
CCDC47-201ENST00000225726 TRPC5Q9UL62 973 aaPredicted RBP18.25■□□□□ 0.51
CCDC47-201ENST00000225726 PTPN12Q05209 780 aaKnown RBP18.25■□□□□ 0.51
CCDC47-201ENST00000225726 DZIP3Q86Y13 1208 aaKnown RBP18.25■□□□□ 0.51
CCDC47-201ENST00000225726 HLFQ16534 295 aa18.24■□□□□ 0.51
CCDC47-201ENST00000225726 PI4K2BQ8TCG2 481 aa18.24■□□□□ 0.51
CCDC47-201ENST00000225726 SIL1Q9H173 461 aa18.24■□□□□ 0.51
CCDC47-201ENST00000225726 BTAF1O14981 1849 aa18.24■□□□□ 0.51
CCDC47-201ENST00000225726 GPATCH3Q96I76 525 aa18.24■□□□□ 0.51
CCDC47-201ENST00000225726 IFIT2P09913 472 aaKnown RBP18.23■□□□□ 0.51
CCDC47-201ENST00000225726 KLHDC4Q8TBB5 520 aa18.23■□□□□ 0.51
CCDC47-201ENST00000225726 DAXXQ9UER7 740 aaPredicted RBP18.23■□□□□ 0.51
CCDC47-201ENST00000225726 ONECUT3O60422 494 aaPredicted RBP18.23■□□□□ 0.51
CCDC47-201ENST00000225726 ZBTB38Q8NAP3 1195 aaPredicted RBP18.23■□□□□ 0.51
CCDC47-201ENST00000225726 PLA2G12BQ9BX93 195 aa18.22■□□□□ 0.51
CCDC47-201ENST00000225726 RTL5Q5HYW3 569 aaPredicted RBP18.22■□□□□ 0.51
CCDC47-201ENST00000225726 AACSQ86V21 672 aa18.22■□□□□ 0.51
CCDC47-201ENST00000225726 NLRP10Q86W26 655 aa18.22■□□□□ 0.51
CCDC47-201ENST00000225726 MYH14Q7Z406 1995 aaKnown RBP18.22■□□□□ 0.51
CCDC47-201ENST00000225726 AK9Q5TCS8 1911 aa18.22■□□□□ 0.51
CCDC47-201ENST00000225726 CDHR2Q9BYE9 1310 aa18.22■□□□□ 0.51
CCDC47-201ENST00000225726 TRIM6-TRIM34B2RNG4 842 aa18.22■□□□□ 0.51
CCDC47-201ENST00000225726 ERC2O15083 957 aa18.21■□□□□ 0.51
CCDC47-201ENST00000225726 BECN1Q14457 450 aa18.21■□□□□ 0.51
CCDC47-201ENST00000225726 TBC1D2BQ9UPU7 963 aa18.21■□□□□ 0.51
CCDC47-201ENST00000225726 CHMP3Q9Y3E7 222 aa18.21■□□□□ 0.51
CCDC47-201ENST00000225726 GLRX3O76003 335 aaKnown RBP18.21■□□□□ 0.51
CCDC47-201ENST00000225726 RILPL2Q969X0 211 aa18.21■□□□□ 0.51
CCDC47-201ENST00000225726 ECHDC1Q9NTX5 307 aa18.21■□□□□ 0.51
CCDC47-201ENST00000225726 EAF2Q96CJ1 260 aaPredicted RBP18.19■□□□□ 0.5
CCDC47-201ENST00000225726 SBF2Q86WG5 1849 aa18.19■□□□□ 0.5
CCDC47-201ENST00000225726 GPTP24298 496 aa18.19■□□□□ 0.5
CCDC47-201ENST00000225726 ZNF34Q8IZ26 560 aa18.19■□□□□ 0.5
CCDC47-201ENST00000225726 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.19■□□□□ 0.5
CCDC47-201ENST00000225726 BCORQ6W2J9 1755 aa18.19■□□□□ 0.5
CCDC47-201ENST00000225726 FAM89AQ96GI7 184 aa18.18■□□□□ 0.5
CCDC47-201ENST00000225726 REC8O95072 547 aa18.18■□□□□ 0.5
CCDC47-201ENST00000225726 CNTROBQ8N137 903 aa18.18■□□□□ 0.5
CCDC47-201ENST00000225726 CHMLP26374 656 aa18.18■□□□□ 0.5
CCDC47-201ENST00000225726 LINC00116Q8NCU8 138 aa18.18■□□□□ 0.5
CCDC47-201ENST00000225726 SEPT12Q8IYM1 358 aa18.17■□□□□ 0.5
CCDC47-201ENST00000225726 CNTNAP4Q9C0A0 1308 aa18.17■□□□□ 0.5
CCDC47-201ENST00000225726 CAMTA2O94983 1202 aa18.17■□□□□ 0.5
CCDC47-201ENST00000225726 TFCP2Q12800 502 aa18.17■□□□□ 0.5
CCDC47-201ENST00000225726 USP26Q9BXU7 913 aa18.17■□□□□ 0.5
CCDC47-201ENST00000225726 CSF1RP07333 972 aa18.17■□□□□ 0.5
CCDC47-201ENST00000225726 PTF1AQ7RTS3 328 aa18.17■□□□□ 0.5
CCDC47-201ENST00000225726 MYH3P11055 1940 aa18.17■□□□□ 0.5
CCDC47-201ENST00000225726 CIAO1O76071 339 aa18.16■□□□□ 0.5
CCDC47-201ENST00000225726 SLC4A3P48751 1232 aa18.16■□□□□ 0.5
CCDC47-201ENST00000225726 ESYT1Q9BSJ8 1104 aa18.16■□□□□ 0.5
CCDC47-201ENST00000225726 CCDC8Q9H0W5 538 aaPredicted RBP18.16■□□□□ 0.5
CCDC47-201ENST00000225726 QTRT2Q9H974 415 aaKnown RBP18.16■□□□□ 0.5
CCDC47-201ENST00000225726 LY75O60449 1722 aa18.16■□□□□ 0.5
CCDC47-201ENST00000225726 TNNI3KQ59H18 835 aa18.16■□□□□ 0.5
CCDC47-201ENST00000225726 FPGT-TNNI3KV9GXZ4 949 aa18.16■□□□□ 0.5
CCDC47-201ENST00000225726 UBN2Q6ZU65 1347 aa18.16■□□□□ 0.5
CCDC47-201ENST00000225726 ATG9AQ7Z3C6 839 aa18.15■□□□□ 0.5
CCDC47-201ENST00000225726 TRMT112Q9UI30 125 aaKnown RBP18.15■□□□□ 0.5
CCDC47-201ENST00000225726 IL15P40933 162 aaPredicted RBP18.15■□□□□ 0.5
CCDC47-201ENST00000225726 MAP4K4O95819 1239 aaPredicted RBP18.15■□□□□ 0.5
CCDC47-201ENST00000225726 CCDC57Q2TAC2 916 aa18.15■□□□□ 0.5
CCDC47-201ENST00000225726 TLR7Q9NYK1 1049 aaKnown RBP18.15■□□□□ 0.5
CCDC47-201ENST00000225726 FBXO3Q9UK99 471 aa18.15■□□□□ 0.5
CCDC47-201ENST00000225726 EYA2O00167 538 aa18.14■□□□□ 0.5
CCDC47-201ENST00000225726 FAM182BQ5T319 152 aa18.14■□□□□ 0.5
CCDC47-201ENST00000225726 GPR108Q9NPR9 543 aa18.14■□□□□ 0.5
CCDC47-201ENST00000225726 RC3H1Q5TC82 1133 aaKnown RBP18.14■□□□□ 0.49
CCDC47-201ENST00000225726 PARP10Q53GL7 1025 aa18.14■□□□□ 0.49
CCDC47-201ENST00000225726 IRS4O14654 1257 aaPredicted RBP18.13■□□□□ 0.49
CCDC47-201ENST00000225726 KIF2CQ99661 725 aa18.13■□□□□ 0.49
CCDC47-201ENST00000225726 CTSWP56202 376 aa18.13■□□□□ 0.49
CCDC47-201ENST00000225726 AK7Q96M32 723 aa18.13■□□□□ 0.49
CCDC47-201ENST00000225726 TBC1D2Q9BYX2 928 aa18.13■□□□□ 0.49
CCDC47-201ENST00000225726 SYNE4Q8N205 404 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms