RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 INPP5BP32019 993 aa11.99□□□□□ -0.49
VCL-201ENST00000211998 C6orf163Q5TEZ5 329 aa11.99□□□□□ -0.49
VCL-201ENST00000211998 CACNA2D4Q7Z3S7 1137 aa11.99□□□□□ -0.49
VCL-201ENST00000211998 ANKS4BQ8N8V4 417 aa11.99□□□□□ -0.49
VCL-201ENST00000211998 PUF60Q9UHX1 559 aaKnown RBP11.99□□□□□ -0.49
VCL-201ENST00000211998 GSTTP1A0A1W2PQM5 241 aa11.99□□□□□ -0.49
VCL-201ENST00000211998 NUTM2BA6NNL0 878 aaPredicted RBP11.99□□□□□ -0.49
VCL-201ENST00000211998 NUTM2EB1AL46 878 aaPredicted RBP11.99□□□□□ -0.49
VCL-201ENST00000211998 EVCP57679 992 aa11.99□□□□□ -0.49
VCL-201ENST00000211998 RRS1Q15050 365 aaKnown RBP11.99□□□□□ -0.49
VCL-201ENST00000211998 NUTM2AQ8IVF1 878 aaPredicted RBP11.99□□□□□ -0.49
VCL-201ENST00000211998 RHOXF2BP0C7M4 288 aa11.99□□□□□ -0.49
VCL-201ENST00000211998 FKBP4Q02790 459 aaKnown RBP eCLIP11.99□□□□□ -0.49
VCL-201ENST00000211998 RHOXF2Q9BQY4 288 aa11.99□□□□□ -0.49
VCL-201ENST00000211998 NSRP1Q9H0G5 558 aaKnown RBP11.99□□□□□ -0.49
VCL-201ENST00000211998 ARID4AP29374 1257 aaPredicted RBP11.99□□□□□ -0.49
VCL-201ENST00000211998 TYRO3Q06418 890 aa11.99□□□□□ -0.49
VCL-201ENST00000211998 TMPOP42166 694 aaKnown RBP11.98□□□□□ -0.49
VCL-201ENST00000211998 LRCH2Q5VUJ6 765 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 POTEDQ86YR6 584 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 C8orf76Q96K31 380 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 IQGAP2Q13576 1575 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 CTAGE9A4FU28 777 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 SEC24BO95487 1268 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 PIP4K2BP78356 416 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 AOPEPQ8N6M6 819 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 EHBP1Q8NDI1 1231 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 DACT1Q9NYF0 836 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 AKAP2Q9Y2D5 859 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 MAGI1Q96QZ7 1491 aaPredicted RBP11.98□□□□□ -0.49
VCL-201ENST00000211998 MPHOSPH10O00566 681 aaKnown RBP11.98□□□□□ -0.49
VCL-201ENST00000211998 ATP6V1AP38606 617 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 AFAP1L1Q8TED9 768 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 BMP2KQ9NSY1 1161 aaPredicted RBP11.98□□□□□ -0.49
VCL-201ENST00000211998 ZNF652Q9Y2D9 606 aa11.98□□□□□ -0.49
VCL-201ENST00000211998 ZSCAN26Q16670 478 aa11.97□□□□□ -0.49
VCL-201ENST00000211998 DAAM2Q86T65 1068 aa11.97□□□□□ -0.49
VCL-201ENST00000211998 AMOTQ4VCS5 1084 aa11.97□□□□□ -0.49
VCL-201ENST00000211998 TDRD12Q587J7 1177 aaKnown RBP11.97□□□□□ -0.49
VCL-201ENST00000211998 B4GALNT4Q76KP1 1039 aa11.97□□□□□ -0.49
VCL-201ENST00000211998 KIF4AO95239 1232 aa11.97□□□□□ -0.49
VCL-201ENST00000211998 TUBB4BP68371 445 aa11.97□□□□□ -0.49
VCL-201ENST00000211998 PPP2R3AQ06190 1150 aa11.97□□□□□ -0.49
VCL-201ENST00000211998 ZNF287Q9HBT7 754 aa11.97□□□□□ -0.49
VCL-201ENST00000211998 ALDH1L2Q3SY69 923 aa11.97□□□□□ -0.49
VCL-201ENST00000211998 RBM5P52756 815 aaKnown RBP eCLIP11.96□□□□□ -0.49
VCL-201ENST00000211998 KIF1BPQ96EK5 621 aa11.96□□□□□ -0.49
VCL-201ENST00000211998 OAS2P29728 719 aaKnown RBP11.96□□□□□ -0.49
VCL-201ENST00000211998 LARP1Q6PKG0 1096 aaKnown RBP11.96□□□□□ -0.49
VCL-201ENST00000211998 CPLX4Q7Z7G2 160 aa11.96□□□□□ -0.49
VCL-201ENST00000211998 CTCFLQ8NI51 663 aaPredicted RBP11.96□□□□□ -0.49
VCL-201ENST00000211998 TRIM27P14373 513 aa11.96□□□□□ -0.5
VCL-201ENST00000211998 FMNL3Q8IVF7 1028 aa11.96□□□□□ -0.5
VCL-201ENST00000211998 LRP2BPQ9P2M1 347 aa11.96□□□□□ -0.5
VCL-201ENST00000211998 KIF14Q15058 1648 aa11.96□□□□□ -0.5
VCL-201ENST00000211998 CDK13Q14004 1512 aaKnown RBP11.96□□□□□ -0.5
VCL-201ENST00000211998 RPAINQ86UA6 219 aa11.96□□□□□ -0.5
VCL-201ENST00000211998 SEPT6Q14141 434 aa11.95□□□□□ -0.5
VCL-201ENST00000211998 TTC22Q5TAA0 569 aa11.95□□□□□ -0.5
VCL-201ENST00000211998 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.95□□□□□ -0.5
VCL-201ENST00000211998 TAOK3Q9H2K8 898 aa11.95□□□□□ -0.5
VCL-201ENST00000211998 ZNF500O60304 480 aaPredicted RBP11.95□□□□□ -0.5
VCL-201ENST00000211998 GLRX3O76003 335 aaKnown RBP11.95□□□□□ -0.5
VCL-201ENST00000211998 AIDAQ96BJ3 306 aa11.95□□□□□ -0.5
VCL-201ENST00000211998 CUL7Q14999 1698 aa11.95□□□□□ -0.5
VCL-201ENST00000211998 ABCA10Q8WWZ4 1543 aa11.95□□□□□ -0.5
VCL-201ENST00000211998 NAIPQ13075 1403 aa11.95□□□□□ -0.5
VCL-201ENST00000211998 DNM1Q05193 864 aaKnown RBP11.95□□□□□ -0.5
VCL-201ENST00000211998 KARSQ15046 597 aaKnown RBP11.95□□□□□ -0.5
VCL-201ENST00000211998 TMOD2Q9NZR1 351 aa11.95□□□□□ -0.5
VCL-201ENST00000211998 CAMSAP2Q08AD1 1489 aa11.95□□□□□ -0.5
VCL-201ENST00000211998 GOLIM4O00461 696 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 ZNF445P59923 1031 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 NUCB1Q02818 461 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 CD109Q6YHK3 1445 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 NDUFAB1O14561 156 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 BUB1BO60566 1050 aaPredicted RBP11.94□□□□□ -0.5
VCL-201ENST00000211998 F13A1P00488 732 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 TUBBP07437 444 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 HSP90AA4PQ58FG1 418 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 CCDC155Q8N6L0 562 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 SERPINA10Q9UK55 444 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 PCDHB15Q9Y5E8 787 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 ARHGEF11O15085 1522 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 STAMBPO95630 424 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 CCDC129Q6ZRS4 1044 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 FAM135AQ9P2D6 1515 aa11.94□□□□□ -0.5
VCL-201ENST00000211998 SETSIPP0DME0 302 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 ZSCAN29Q8IWY8 852 aaPredicted RBP11.93□□□□□ -0.5
VCL-201ENST00000211998 TMOD3Q9NYL9 352 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 GCKP35557 465 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 METTL24Q5JXM2 366 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 VPS36Q86VN1 386 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 ZGPATQ8N5A5 531 aaKnown RBP11.93□□□□□ -0.5
VCL-201ENST00000211998 PPP1R1BQ9UD71 204 aaPredicted RBP11.93□□□□□ -0.5
VCL-201ENST00000211998 MKRN1Q9UHC7 482 aaKnown RBP11.93□□□□□ -0.5
VCL-201ENST00000211998 U3KPZ7 1027 aaPredicted RBP11.93□□□□□ -0.5
VCL-201ENST00000211998 LZTFL1Q9NQ48 299 aa11.93□□□□□ -0.5
VCL-201ENST00000211998 ZC3H6P61129 1189 aaKnown RBP11.93□□□□□ -0.5
VCL-201ENST00000211998 CCT2P78371 535 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms