RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 SEC62Q99442 399 aaKnown RBP6.95□□□□□ -1.3
VPS13D-201ENST00000011700 NUP88Q99567 741 aaPredicted RBP6.95□□□□□ -1.3
VPS13D-201ENST00000011700 PDE4BQ07343 736 aa6.95□□□□□ -1.3
VPS13D-201ENST00000011700 CATIPQ7Z7H3 387 aa6.95□□□□□ -1.3
VPS13D-201ENST00000011700 PDRG1Q9NUG6 133 aa6.95□□□□□ -1.3
VPS13D-201ENST00000011700 CEP126Q9P2H0 1117 aa6.95□□□□□ -1.3
VPS13D-201ENST00000011700 MAGI1Q96QZ7 1491 aaPredicted RBP6.95□□□□□ -1.3
VPS13D-201ENST00000011700 TERF1P54274 439 aa6.95□□□□□ -1.3
VPS13D-201ENST00000011700 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS13D-201ENST00000011700 FOXD4L1Q9NU39 408 aa6.95□□□□□ -1.3
VPS13D-201ENST00000011700 HYPKQ9NX55 129 aa6.95□□□□□ -1.3
VPS13D-201ENST00000011700 MYH8P13535 1937 aa6.95□□□□□ -1.3
VPS13D-201ENST00000011700 ZNF76P36508 570 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 KIF5AQ12840 1032 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 MAP3K12Q12852 859 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 TRIM14Q14142 442 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 POTEDQ86YR6 584 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 EIF2S2P20042 333 aaKnown RBP6.94□□□□□ -1.3
VPS13D-201ENST00000011700 AIDAQ96BJ3 306 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 EBAG9O00559 213 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 ARHGAP25P42331 645 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 DRC1Q96MC2 740 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 SUDS3Q9H7L9 328 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-201ENST00000011700 TDO2P48775 406 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 FOXD4L5Q5VV16 416 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-201ENST00000011700 PHLDB2Q86SQ0 1253 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 FOXD4L4Q8WXT5 416 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-201ENST00000011700 MYO18AQ92614 2054 aaKnown RBP6.94□□□□□ -1.3
VPS13D-201ENST00000011700 HDGFL1Q5TGJ6 251 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 MSL1Q68DK7 614 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 BCL2L13Q9BXK5 485 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 LUC7L2Q9Y383 392 aaKnown RBP6.94□□□□□ -1.3
VPS13D-201ENST00000011700 GTF2F1P35269 517 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS13D-201ENST00000011700 BRPF1P55201 1214 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-201ENST00000011700 TRPC3Q13507 836 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 MLECQ14165 292 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 ANKRD24Q8TF21 1146 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 BAG3O95817 575 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 PPP1R14CQ8TAE6 165 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 EXOC6Q8TAG9 804 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 C8orf76Q96K31 380 aa6.94□□□□□ -1.3
VPS13D-201ENST00000011700 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS13D-201ENST00000011700 KIF4BQ2VIQ3 1234 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 BMP2KLQ5H9B9 411 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 CCDC174Q6PII3 467 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 NAP1L4Q99733 375 aaKnown RBP6.93□□□□□ -1.3
VPS13D-201ENST00000011700 LIMCH1Q9UPQ0 1083 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 ASXL1Q8IXJ9 1541 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 C11orf95C9JLR9 678 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-201ENST00000011700 MAP7D1Q3KQU3 841 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 KLHL40Q2TBA0 621 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 SRGAP1Q7Z6B7 1085 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 CACNA2D3Q8IZS8 1091 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 MRC2Q9UBG0 1479 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 MPHOSPH10O00566 681 aaKnown RBP6.93□□□□□ -1.3
VPS13D-201ENST00000011700 CALML3P27482 149 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 GSTO1P78417 241 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 SETDB1Q15047 1291 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 TRIML1Q8N9V2 468 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 MYH7P12883 1935 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 MNAT1P51948 309 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 FBF1Q8TES7 1133 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 CCDC97Q96F63 343 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-201ENST00000011700 ODF2LQ9ULJ1 636 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 NCBP1Q09161 790 aaKnown RBP6.93□□□□□ -1.3
VPS13D-201ENST00000011700 MTRF1LQ9UGC7 380 aaKnown RBP6.93□□□□□ -1.3
VPS13D-201ENST00000011700 SHROOM2Q13796 1616 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 VAV2P52735 878 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 EVI5LQ96CN4 794 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 UTP14AQ9BVJ6 771 aaKnown RBP6.93□□□□□ -1.3
VPS13D-201ENST00000011700 IMPG2Q9BZV3 1241 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 TPCN1Q9ULQ1 816 aa6.93□□□□□ -1.3
VPS13D-201ENST00000011700 KANK4Q5T7N3 995 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-201ENST00000011700 PPP1R1BQ9UD71 204 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-201ENST00000011700 PPP2R5BQ15173 497 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 VWA3BQ502W6 1294 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 CFTRP13569 1480 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 C16orf45Q96MC5 204 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-201ENST00000011700 NUCKS1Q9H1E3 243 aaKnown RBP6.92□□□□□ -1.3
VPS13D-201ENST00000011700 GOLGA6CA6NDK9 693 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 GOLGA6BA6NDN3 693 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 GOLGA6DP0CG33 693 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 GNAT2P19087 354 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 SPC24Q8NBT2 197 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 TRIM7Q9C029 511 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 VCX3AQ9NNX9 186 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 GOLGA6AQ9NYA3 693 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 SNW1Q13573 536 aaKnown RBP6.92□□□□□ -1.3
VPS13D-201ENST00000011700 THEGQ9P2T0 379 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 TSKSQ9UJT2 592 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 DNAJC8O75937 253 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-201ENST00000011700 SARNPP82979 210 aaKnown RBP6.92□□□□□ -1.3
VPS13D-201ENST00000011700 ATP11AP98196 1134 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 RAPGEF6Q8TEU7 1601 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 CCDC194A0A1B0GVG4 234 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 A0A1W2PRG0 241 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 GIGYF1O75420 1035 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-201ENST00000011700 DUOX2Q9NRD8 1548 aa6.92□□□□□ -1.3
VPS13D-201ENST00000011700 STX6O43752 255 aa6.91□□□□□ -1.3
VPS13D-201ENST00000011700 LIG1P18858 919 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms