RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KCNJ2P63252 427 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 SLC25A3Q00325 362 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 CHRNEQ04844 493 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 GNA13Q14344 377 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 RPS26P11Q5JNZ5 115 aaPredicted RBP27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 TBCELQ5QJ74 424 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 LRRC74BQ6ZQY2 392 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 NET1Q7Z628 596 aaPredicted RBP27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 PTOV1Q86YD1 416 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 SULF2Q8IWU5 870 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 Q8NA96 180 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 LSM14AQ8ND56 463 aaKnown RBP27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 NFKBIDQ8NI38 313 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 BBC3Q96PG8 261 aaPredicted RBP27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 PROK2Q9HC23 129 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 SPAG4Q9NPE6 437 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 PCDHGA10Q9Y5H3 936 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 ANKRD33BA6NCL7 494 aa27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 PEX1O43933 1283 aa27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 FADS1O60427 444 aa27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 NGFRP08138 427 aa27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 SLC15A3Q8IY34 581 aa27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 ZNF619Q8N2I2 560 aa27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 POGLUT1Q8NBL1 392 aa27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 TREX2Q9BQ50 279 aaPredicted RBP27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 ANGPTL4Q9BY76 406 aa27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 TBL1XR1Q9BZK7 514 aa27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 CALML5Q9NZT1 146 aa27.12■■□□□ 1.93
LIMCH1-211ENST00000509638 C5orf58C9J3I9 102 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 NPIPB9F8W1W9 429 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 NME4O00746 187 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 GUSBP08236 651 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 TBXA2RP21731 343 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 PTGDSP41222 190 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 GZMMP51124 257 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 CDK6Q00534 326 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 NFATC3Q12968 1075 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 SNTA1Q13424 505 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 CALHM3Q86XJ0 350 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 PGAM4Q8N0Y7 254 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 ZNF527Q8NB42 609 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 C11orf65Q8NCR3 313 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 OR2M7Q8NG81 312 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 FAM173AQ9BQD7 235 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 SPATA9Q9BWV2 254 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 SAP130Q9H0E3 1048 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 QRSL1Q9H0R6 528 aaKnown RBP27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 NDE1Q9NXR1 346 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 COL6A6A6NMZ7 2263 aa27.11■■□□□ 1.93
LIMCH1-211ENST00000509638 CENPVL1A0A0U1RR11 272 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 B2RBV5 119 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 SCDO00767 359 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 HPGDP15428 266 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 CNR1P21554 472 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 MEOX1P50221 254 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 PMP22Q01453 160 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 SCARB2Q14108 478 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 ZNF630Q2M218 657 aaPredicted RBP27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 C16orf89Q6UX73 402 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 APOOLQ6UXV4 268 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 PNPLA5Q7Z6Z6 429 aaPredicted RBP27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 HMGN2P46Q86SG4 172 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 ZZZ3Q8IYH5 903 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 ZNF614Q8N883 585 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 RBM15BQ8NDT2 890 aaKnown RBP27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 HOXD1Q9GZZ0 328 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 ABCD2Q9UBJ2 740 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 WIF1Q9Y5W5 379 aa27.1■■□□□ 1.93
LIMCH1-211ENST00000509638 PINLYPA6NC86 204 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 KLRC4-KLRK1H3BQV0 150 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 RNF144AP50876 292 aaPredicted RBP27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 ATP12AP54707 1039 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 SLC30A6Q6NXT4 461 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 FAM98AQ8NCA5 519 aaKnown RBP27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 SLC39A7Q92504 469 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 RTN4RQ9BZR6 473 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 KCNE5Q9UJ90 142 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 USP22Q9UPT9 525 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 AP3M1Q9Y2T2 418 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 DSPPQ9NZW4 1301 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 ALG1L2C9J202 215 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 SORBS2O94875 1100 aaKnown RBP27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 CPOXP36551 454 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 RBBP4Q09028 425 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 INAQ16352 499 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 PDZK1Q5T2W1 519 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 C6orf89Q6UWU4 347 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 MARCH3Q86UD3 253 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 REXO5Q96IC2 774 aaKnown RBP27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 ZNF597Q96LX8 424 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 ZNF583Q96ND8 569 aa27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 TUBA8Q9NY65 449 aaPredicted RBP27.09■■□□□ 1.93
LIMCH1-211ENST00000509638 C2orf72A6NCS6 295 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 C17orf51A8MQB3 221 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 FAM220BPB1ANY3 271 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 ADAM10O14672 748 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 UGT2B17O75795 530 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 SNX4O95219 450 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 PCGF2P35227 344 aa27.08■■□□□ 1.93
LIMCH1-211ENST00000509638 RFC3P40938 356 aa27.08■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms