RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-204	ENST00000474025	IRF9	Q00978	393 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	SRSF2	Q01130	221 aa	Known RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	IFT88	Q13099	833 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TRAF3	Q13114	568 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TAB1	Q15750	504 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	SGCB	Q16585	318 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	FAM83E	Q2M2I3	478 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ERCC6L	Q2NKX8	1250 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	GLYR1	Q49A26	553 aa	Predicted RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	NCMAP	Q5T1S8	102 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	GRTP1	Q5TC63	336 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	LIPN	Q5VXI9	398 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ALKBH2	Q6NS38	261 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	PPP4R4	Q6NUP7	873 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	METTL2B	Q6P1Q9	378 aa	Known RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	LINC00114	Q6XXX2	140 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	CYS1	Q717R9	158 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	DTX2	Q86UW9	622 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	STK32C	Q86UX6	486 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	SLC44A2	Q8IWA5	706 aa	Predicted RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	CTAGE3P	Q8IX95	158 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	KLHL7	Q8IXQ5	586 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	GABRG1	Q8N1C3	465 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	SLC35F6	Q8N357	371 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	STEAP2	Q8NFT2	490 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	KBTBD8	Q8NFY9	601 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	OR10H5	Q8NGA6	315 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	OR10D3	Q8NH80	312 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	UHMK1	Q8TAS1	419 aa	Known RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	PYROXD1	Q8WU10	500 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	KCTD4	Q8WVF5	259 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	KAT2A	Q92830	837 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	S100PBP	Q96BU1	408 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	HS6ST2	Q96MM7	605 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	NSUN5	Q96P11	429 aa	Known RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TNFRSF13C	Q96RJ3	184 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TACO1	Q9BSH4	297 aa	Known RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TRAF4	Q9BUZ4	470 aa	Predicted RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	NTMT1	Q9BV86	223 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	BEX2	Q9BXY8	128 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TRIM31	Q9BZY9	425 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TRIM2	Q9C040	744 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ESRP2	Q9H6T0	727 aa	Known RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	C12orf49	Q9H741	205 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	PTGES2	Q9H7Z7	377 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	NOL11	Q9H8H0	719 aa	Known RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	BARX1	Q9HBU1	254 aa	Predicted RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	FANCF	Q9NPI8	374 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	FARSB	Q9NSD9	589 aa	Known RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	AHSP	Q9NZD4	102 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	UTS2R	Q9UKP6	389 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	PSME2	Q9UL46	239 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	SLC12A4	Q9UP95	1085 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TNPO3	Q9Y5L0	923 aa	Known RBP	4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ZNF780B	Q9Y6R6	833 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	FREM1	Q5H8C1	2179 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	MALRD1	Q5VYJ5	2156 aa		4.57	□□□□□ -1.68
SNRNP40-204	ENST00000474025	PCNX3	Q9H6A9	2034 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	FAM234B	A2RU67	622 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	DPRX	A6NFQ7	191 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ELOA3D	A6NLF2	546 aa	Predicted RBP	4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	EIF1AY	O14602	144 aa	Known RBP	4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ADAMDEC1	O15204	470 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	SSX4	O60224	188 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	RAMP1	O60894	148 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	C2	P06681	752 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TUBB	P07437	444 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ZNF17	P17021	662 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ADH6	P28332	368 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ARL1	P40616	181 aa	Predicted RBP	4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ALDH9A1	P49189	494 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	NUDT6	P53370	316 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	CDH11	P55287	796 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TRA2B	P62995	288 aa	Known RBP	4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	PSG6	Q00889	435 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	BSPH1	Q075Z2	132 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	LOXL1	Q08397	574 aa	Predicted RBP	4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ZNF155	Q12901	538 aa	Predicted RBP	4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ACAP2	Q15057	778 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TSC22D1	Q15714	1073 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ELOA3B	Q3SY89	546 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	GGTA1P	Q4G0N0	100 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	CYP27C1	Q4G0S4	372 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	SGO1	Q5FBB7	561 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TECRL	Q5HYJ1	363 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	LGSN	Q5TDP6	509 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	FAM219B	Q5XKK7	198 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	MFSD12	Q6NUT3	480 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	LETMD1	Q6P1Q0	360 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	APOOL	Q6UXV4	268 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	TFAP2E	Q6VUC0	442 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	C3orf62	Q6ZUJ4	267 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	CCDC91	Q7Z6B0	441 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	GALNT10	Q86SR1	603 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	MARCH3	Q86UD3	253 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	LRRC8A	Q8IWT6	810 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	SAMD14	Q8IZD0	417 aa	Predicted RBP	4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	ZNF619	Q8N2I2	560 aa		4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	4.56	□□□□□ -1.68
SNRNP40-204	ENST00000474025	C1orf52	Q8N6N3	182 aa	Known RBP	4.56	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms