RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 RAB3AP20336 220 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 CEACAM6P40199 344 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 BUD31P41223 144 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 CCR9P51686 369 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 CDK6Q00534 326 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 FLI1Q01543 452 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 NAAAQ02083 359 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SNTA1Q13424 505 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 NFE2L1Q14494 772 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ATPAF1Q5TC12 328 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 LHX8Q68G74 356 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SLC25A24Q6NUK1 477 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 FAM198BQ6UWH4 519 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 MOB2Q70IA6 237 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 LDB1Q86U70 411 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 LINC01599Q8WXQ3 324 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 MALSU1Q96EH3 234 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SLC38A2Q96QD8 506 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 TEAD3Q99594 435 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 UCK2Q9BZX2 261 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 UCKL1Q9NWZ5 548 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 C17orf113A0A1B0GUU1 675 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 NUDT19A8MXV4 375 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 KPNA3O00505 521 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 TO15178 435 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 FABP7O15540 132 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 PRSS56P0CW18 603 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 MMP11P24347 488 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 RAP2BP61225 183 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 GRIN2CQ14957 1233 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 P2RY14Q15391 338 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 TRAM1Q15629 374 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 TMEM255AQ5JRV8 349 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 HECTD3Q5T447 861 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ADGRF1Q5T601 910 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 FAM199XQ6PEV8 388 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 GPR135Q8IZ08 494 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ATP6V1C2Q8NEY4 427 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 RERGQ96A58 199 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 DDX31Q9H8H2 851 aaKnown RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SGK2Q9HBY8 427 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 MGAT4CQ9UBM8 478 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 RAI2Q9Y5P3 530 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 U3KQV3 271 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 hCG_1807616A0A1W2PRN6 198 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF593O00488 134 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ETHE1O95571 254 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 PDYNP01213 254 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 NDUFV2P19404 249 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ALDH4A1P30038 563 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 NTSP30990 170 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 PRSS53Q2L4Q9 553 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ALG11Q2TAA5 492 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 LCN1P1Q5VSP4 162 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 MZT2AQ6P582 158 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 WASH2PQ6VEQ5 465 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 PTCHD4Q6ZW05 846 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 DCUN1D3Q8IWE4 304 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 DBF4BQ8NFT6 615 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 CCNL2Q96S94 520 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ABHD1Q96SE0 405 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SCRT1Q9BWW7 348 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ELL3Q9HB65 397 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ZDHHC3Q9NYG2 299 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 AHSPQ9NZD4 102 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 PRELID1Q9Y255 219 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 CITO14578 2027 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 C1QTNF3-AMACRE9PGA6 284 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 TCRBP04435 133 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 IFNW1P05000 195 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 RPA2P15927 270 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 MAGP20916 626 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 HOXA6P31267 233 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 CYP4F8P98187 520 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF528Q3MIS6 628 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 LRRC73Q5JTD7 316 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 PRSS55Q6UWB4 352 aaPredicted RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF813Q6ZN06 617 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 TMPRSS11FQ6ZWK6 438 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 GJD3Q8N144 294 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 NAGSQ8N159 534 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 HORMAD2Q8N7B1 307 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SLC25A38Q96DW6 304 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 NECTIN4Q96NY8 510 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 C11orf16Q9NQ32 467 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SLC35C2Q9NQQ7 365 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 FARSBQ9NSD9 589 aaKnown RBP5.01□□□□□ -1.61
SYNE1-220ENST00000471834 ING3Q9NXR8 418 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SCML1Q9UN30 329 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 SCN8AQ9UQD0 1980 aa5.01□□□□□ -1.61
SYNE1-220ENST00000471834 PAHP00439 452 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 MST1P26927 711 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 OMPP47874 163 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 CASP9P55211 416 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 CTBP2P56545 445 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF763Q0D2J5 394 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 TSTQ16762 297 aaKnown RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 BTBD16Q32M84 506 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 HEPHL1Q6MZM0 1159 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ANGPTL5Q86XS5 388 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms