RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ITIH1P19827 911 aa21■□□□□ 0.95
CDX1-201ENST00000231656 TUBA3CQ13748 450 aa21■□□□□ 0.95
CDX1-201ENST00000231656 ISXQ2M1V0 245 aa21■□□□□ 0.95
CDX1-201ENST00000231656 GPR107Q5VW38 600 aa21■□□□□ 0.95
CDX1-201ENST00000231656 PGBD2Q6P3X8 592 aa21■□□□□ 0.95
CDX1-201ENST00000231656 PODNL1Q6PEZ8 512 aa21■□□□□ 0.95
CDX1-201ENST00000231656 OR52P1PQ8NH57 321 aa21■□□□□ 0.95
CDX1-201ENST00000231656 CLIP3Q96DZ5 547 aa21■□□□□ 0.95
CDX1-201ENST00000231656 RHNO1Q9BSD3 238 aa21■□□□□ 0.95
CDX1-201ENST00000231656 FNDC11Q9BVV2 318 aa21■□□□□ 0.95
CDX1-201ENST00000231656 YIPF2Q9BWQ6 316 aa21■□□□□ 0.95
CDX1-201ENST00000231656 UCK2Q9BZX2 261 aa21■□□□□ 0.95
CDX1-201ENST00000231656 STRADBQ9C0K7 418 aa21■□□□□ 0.95
CDX1-201ENST00000231656 AKAP7Q9P0M2 348 aaPredicted RBP21■□□□□ 0.95
CDX1-201ENST00000231656 ZAR1LA6NP61 321 aa21■□□□□ 0.95
CDX1-201ENST00000231656 CLDN4O14493 209 aa21■□□□□ 0.95
CDX1-201ENST00000231656 OR10H3O60404 316 aa21■□□□□ 0.95
CDX1-201ENST00000231656 GABRB1P18505 474 aa21■□□□□ 0.95
CDX1-201ENST00000231656 CHMP24386 653 aa21■□□□□ 0.95
CDX1-201ENST00000231656 MAP3K8P41279 467 aa21■□□□□ 0.95
CDX1-201ENST00000231656 LIMK1P53667 647 aa21■□□□□ 0.95
CDX1-201ENST00000231656 MAPK10P53779 464 aa21■□□□□ 0.95
CDX1-201ENST00000231656 CRISP1P54107 249 aa21■□□□□ 0.95
CDX1-201ENST00000231656 SH3BGRP55822 239 aaPredicted RBP21■□□□□ 0.95
CDX1-201ENST00000231656 CSNK2BP67870 215 aa21■□□□□ 0.95
CDX1-201ENST00000231656 SLC13A2Q13183 592 aa21■□□□□ 0.95
CDX1-201ENST00000231656 PTGES3Q15185 160 aaKnown RBP21■□□□□ 0.95
CDX1-201ENST00000231656 ZCCHC12Q6PEW1 402 aa21■□□□□ 0.95
CDX1-201ENST00000231656 DHRS13Q6UX07 377 aa21■□□□□ 0.95
CDX1-201ENST00000231656 NLGN4XQ8N0W4 816 aa21■□□□□ 0.95
CDX1-201ENST00000231656 DEPDC4Q8N2C3 294 aa21■□□□□ 0.95
CDX1-201ENST00000231656 C12orf43Q96C57 262 aaKnown RBP21■□□□□ 0.95
CDX1-201ENST00000231656 SDF2Q99470 211 aa21■□□□□ 0.95
CDX1-201ENST00000231656 DGCR6LQ9BY27 220 aa21■□□□□ 0.95
CDX1-201ENST00000231656 MTHFD2LQ9H903 347 aaPredicted RBP21■□□□□ 0.95
CDX1-201ENST00000231656 MKLN1Q9UL63 735 aa21■□□□□ 0.95
CDX1-201ENST00000231656 PCDHGA10Q9Y5H3 936 aa21■□□□□ 0.95
CDX1-201ENST00000231656 MRPS14O60783 128 aaKnown RBP20.99■□□□□ 0.95
CDX1-201ENST00000231656 CTNSO60931 367 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 TRMUO75648 421 aaKnown RBP20.99■□□□□ 0.95
CDX1-201ENST00000231656 HBQ1P09105 142 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 ALOX5P09917 674 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 UGT2B15P54855 530 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 BTG2P78543 158 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 TEKQ02763 1124 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 EXOSC7Q15024 291 aaKnown RBP20.99■□□□□ 0.95
CDX1-201ENST00000231656 ARHGAP40Q5TG30 622 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 DGAT2L6Q6ZPD8 337 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 SLCO6A1Q86UG4 719 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 CCDC103Q8IW40 242 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 CDRT4Q8N9R6 151 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 OR1F2PQ96R84 312 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 SIGLEC11Q96RL6 698 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 CCDC90BQ9GZT6 254 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 TRIM45Q9H8W5 580 aaPredicted RBP20.99■□□□□ 0.95
CDX1-201ENST00000231656 LIN28AQ9H9Z2 209 aaKnown RBP20.99■□□□□ 0.95
CDX1-201ENST00000231656 PRTFDC1Q9NRG1 225 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 PLCXD1Q9NUJ7 323 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 ZNF443Q9Y2A4 671 aaPredicted RBP20.99■□□□□ 0.95
CDX1-201ENST00000231656 WDR45Q9Y484 360 aa20.99■□□□□ 0.95
CDX1-201ENST00000231656 CFAP54Q96N23 3096 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 OR2W5A6NFC9 320 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 TMX2-CTNND1H3BSU7 103 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 TPST2O60704 377 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 OSMP13725 252 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 IDH2P48735 452 aaKnown RBP20.98■□□□□ 0.95
CDX1-201ENST00000231656 EMX1Q04741 257 aaPredicted RBP20.98■□□□□ 0.95
CDX1-201ENST00000231656 MED25Q71SY5 747 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 ERI1Q8IV48 349 aaKnown RBP20.98■□□□□ 0.95
CDX1-201ENST00000231656 MORN4Q8NDC4 146 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 ZNF540Q8NDQ6 660 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 FAR1Q8WVX9 515 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 IPCEF1Q8WWN9 437 aaPredicted RBP20.98■□□□□ 0.95
CDX1-201ENST00000231656 STACQ99469 402 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 ZNF350Q9GZX5 532 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 CCNB1IP1Q9NPC3 277 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 DUSP22Q9NRW4 184 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 LANCL2Q9NS86 450 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 SLC13A4Q9UKG4 626 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 SATB2Q9UPW6 733 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 NUP210LQ5VU65 1888 aa20.98■□□□□ 0.95
CDX1-201ENST00000231656 B4E171 279 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 TGFBR3LH3BV60 316 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 FRS3O43559 492 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 CSO75390 466 aaKnown RBP20.97■□□□□ 0.95
CDX1-201ENST00000231656 CBX7O95931 251 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 MT-CO3P00414 261 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 TSPAN7P41732 249 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 HSD17B7P56937 341 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 DUSP8Q13202 625 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 COX15Q7KZN9 410 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 CLIP4Q8N3C7 705 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 NR4A3Q92570 626 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 HOXB13Q92826 284 aaPredicted RBP20.97■□□□□ 0.95
CDX1-201ENST00000231656 NAA50Q9GZZ1 169 aaKnown RBP20.97■□□□□ 0.95
CDX1-201ENST00000231656 SLC22A11Q9NSA0 550 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 SLC39A1Q9NY26 324 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 IFT52Q9Y366 437 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 LOXL2Q9Y4K0 774 aa20.97■□□□□ 0.95
CDX1-201ENST00000231656 CLDN16Q9Y5I7 305 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms