RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 CD86P42081 329 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 CASP2P42575 452 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 GPR1P46091 355 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZNF75DP51815 510 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 PDX1P52945 283 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 UCNP55089 124 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 CLDN6P56747 220 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 AP1B1Q10567 949 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 WASHC5Q12768 1159 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 MFAP5Q13361 173 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 TRA2AQ13595 282 aaKnown RBP eCLIP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 MELKQ14680 651 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 SPA17Q15506 151 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 PYCR3Q53H96 274 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 ODF2Q5BJF6 829 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 KCTD16Q68DU8 428 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 RAET1GQ6H3X3 334 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 KDELC1Q6UW63 502 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 TAF8Q7Z7C8 310 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 LDB1Q86U70 411 aaPredicted RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 MARCH9Q86YJ5 346 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 GPALPP1Q8IXQ4 340 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZNF248Q8NDW4 579 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 LPCAT1Q8NF37 534 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 WDR36Q8NI36 951 aaKnown RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 TFB1MQ8WVM0 346 aaKnown RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 P3H4Q92791 437 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 DAZLQ92904 295 aaKnown RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZNF501Q96CX3 271 aaPredicted RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 WBP1Q96G27 269 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 DUX3Q96PT4 197 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 VPS35Q96QK1 796 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 PAFAH2Q99487 392 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 CCDC3Q9BQI4 270 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 ZSCAN5AQ9BUG6 496 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 RIOK2Q9BVS4 552 aaKnown RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 GSDMCQ9BYG8 508 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 CARD9Q9H257 536 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 LRRN3Q9H3W5 708 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 TRABDQ9H4I3 376 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 PELI2Q9HAT8 420 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 MRPL40Q9NQ50 206 aaKnown RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 PSD3Q9NYI0 1048 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 PKD2L2Q9NZM6 624 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 HACD3Q9P035 362 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 FAM153AQ9UHL3 310 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 PTRH2Q9Y3E5 179 aaKnown RBP3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 HEY1Q9Y5J3 304 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 LOC400499M0QZD8 3231 aa3.28□□□□□ -1.88
CKS1BP3-201ENST00000600888 ATMQ13315 3056 aa3.28□□□□□ -1.89
CKS1BP3-201ENST00000600888 HEATR5BQ9P2D3 2071 aa3.28□□□□□ -1.89
CKS1BP3-201ENST00000600888 GCN1Q92616 2671 aaKnown RBP3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 KALRNO60229 2985 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 CCDC88CQ9P219 2028 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 FLNBO75369 2602 aaKnown RBP3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 SPTA1P02549 2419 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 A0A0U1RQS6 177 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 C1orf232A0A0U1RR37 186 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 PRSS51A0A1B0GVH4 220 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 ELOVL7A1L3X0 281 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 DUXAA6NLW8 204 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 MIF4GDA9UHW6 222 aaKnown RBP3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 ADAMDEC1O15204 470 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 NVLO15381 856 aaKnown RBP3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 B4GAT1O43505 415 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 SSX4O60224 188 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 PCDH7O60245 1069 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 CIDEAO60543 219 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 AVILO75366 819 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 CREG1O75629 220 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 ZWINTO95229 277 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 CPNE6O95741 557 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 TSHBP01222 138 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 RPLP0P05388 317 aaKnown RBP3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 F3P13726 295 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 XRCC1P18887 633 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 GNAZP19086 355 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 HLA-DPA1P20036 260 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 SAT1P21673 171 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 AK4P27144 223 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 CD82P27701 267 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 CD1CP29017 333 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 RBMS1P29558 406 aaKnown RBP3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 CETN2P41208 172 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 ACTR1BP42025 376 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 GNPDA1P46926 289 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 MARCKSL1P49006 195 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 CRIP2P52943 208 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 LIMK2P53671 638 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 RWDD2BP57060 319 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 ACTR1AP61163 376 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 TUBB4BP68371 445 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 SIRPAP78324 504 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 CCL7P80098 99 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 PLA2G7Q13093 441 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 PCLAFQ15004 111 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 IYDQ6PHW0 289 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 ABRAXAS1Q6UWZ7 409 aa3.27□□□□□ -1.89
CKS1BP3-201ENST00000600888 WASH2PQ6VEQ5 465 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms