RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TRIOBPQ9H2D6 2365 aa15.23■□□□□ 0.03
COL4A1-204ENST00000543140 TNRC18O15417 2968 aaPredicted RBP15.23■□□□□ 0.03
COL4A1-204ENST00000543140 SLC9B1P1A6NJY1 282 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 CLDN25C9JDP6 229 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 THY1P04216 161 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 ATP1B1P05026 303 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 SRFP11831 508 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 BLKP51451 505 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 ZNF91Q05481 1191 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 MAPK14Q16539 360 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 TSTQ16762 297 aaKnown RBP15.22■□□□□ 0.03
COL4A1-204ENST00000543140 NDUFA9Q16795 377 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 FIGNL1Q6PIW4 674 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 GPR151Q8TDV0 419 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 LRR1Q96L50 414 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 CENPOQ9BU64 300 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 SLIRPQ9GZT3 109 aaKnown RBP15.22■□□□□ 0.03
COL4A1-204ENST00000543140 SEMA6CQ9H3T2 930 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 TRIM45Q9H8W5 580 aaPredicted RBP15.22■□□□□ 0.03
COL4A1-204ENST00000543140 GALNT8Q9NY28 637 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 OSGIN1Q9UJX0 560 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 POMT2Q9UKY4 750 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 GPR52Q9Y2T5 361 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 MYO15AQ9UKN7 3530 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 PFDN1O60925 122 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 AGR2O95994 175 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 RPLP0P05388 317 aaKnown RBP15.22■□□□□ 0.03
COL4A1-204ENST00000543140 DBTP11182 482 aaKnown RBP15.22■□□□□ 0.03
COL4A1-204ENST00000543140 RFX3P48380 749 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 RPS3AP61247 264 aaKnown RBP15.22■□□□□ 0.03
COL4A1-204ENST00000543140 LARS2Q15031 903 aaKnown RBP15.22■□□□□ 0.03
COL4A1-204ENST00000543140 SNAPC1Q16533 368 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 TMEM201Q5SNT2 666 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 DGAT2L6Q6ZPD8 337 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 GDF7Q7Z4P5 450 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 C9orf43Q8TAL5 461 aaPredicted RBP15.22■□□□□ 0.03
COL4A1-204ENST00000543140 TMEM255BQ8WV15 326 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 PIGUQ9H490 435 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 CACYBPQ9HB71 228 aaKnown RBP15.22■□□□□ 0.03
COL4A1-204ENST00000543140 RHBDL2Q9NX52 303 aa15.22■□□□□ 0.03
COL4A1-204ENST00000543140 IGHV1OR15-9A0A0B4J2B8 117 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 PEX12O00623 359 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 CDC123O75794 336 aaPredicted RBP15.21■□□□□ 0.03
COL4A1-204ENST00000543140 WNT1P04628 370 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 ALOX5P09917 674 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 GKN3PP0CG01 181 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 GPR4P46093 362 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 CDK5Q00535 292 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 PRICKLE4Q2TBC4 344 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 SYT14P1Q58G82 188 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 DCST2Q5T1A1 773 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 MFSD4BQ5TF39 518 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 ZC3H14Q6PJT7 736 aaKnown RBP15.21■□□□□ 0.03
COL4A1-204ENST00000543140 ZNF367Q7RTV3 350 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 SNX29P2Q8IUI4 249 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 GALNT12Q8IXK2 581 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 COX18Q8N8Q8 333 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 OR8D4Q8NGM9 314 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 VMP1Q96GC9 406 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 PHF7Q9BWX1 381 aaPredicted RBP15.21■□□□□ 0.03
COL4A1-204ENST00000543140 AKIP1Q9NQ31 210 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 MAT2BQ9NZL9 334 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 IL20RAQ9UHF4 553 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 RPL36Q9Y3U8 105 aaKnown RBP15.21■□□□□ 0.03
COL4A1-204ENST00000543140 THADAQ6YHU6 1953 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 A0A0A6YYC8 382 aaPredicted RBP15.21■□□□□ 0.03
COL4A1-204ENST00000543140 AGAP5A6NIR3 686 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 I3L1I5 382 aaPredicted RBP15.21■□□□□ 0.03
COL4A1-204ENST00000543140 PIP5K1CO60331 668 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 APOL3O95236 402 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 PIPP12273 146 aaPredicted RBP15.21■□□□□ 0.03
COL4A1-204ENST00000543140 PRG2P13727 222 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 GSTM3P21266 225 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 IFNA8P32881 189 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 TDGQ13569 410 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 ATP1A4Q13733 1029 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 TBC1D25Q3MII6 688 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 PAQR6Q6TCH4 344 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 NRMQ8IXM6 262 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 TEX47Q8TBZ9 253 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 GNPDA2Q8TDQ7 276 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 ANKRD9Q96BM1 317 aaPredicted RBP15.21■□□□□ 0.03
COL4A1-204ENST00000543140 SLC41A3Q96GZ6 507 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 TMEM80Q96HE8 168 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 POLDIP3Q9BY77 421 aaKnown RBP15.21■□□□□ 0.03
COL4A1-204ENST00000543140 SAP130Q9H0E3 1048 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 ANKHQ9HCJ1 492 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 HMG20AQ9NP66 347 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 IRAK4Q9NWZ3 460 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 HCN3Q9P1Z3 774 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 SLC7A7Q9UM01 511 aa15.21■□□□□ 0.03
COL4A1-204ENST00000543140 OR2W5A6NFC9 320 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 CHST10O43529 356 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 UBXN7O94888 489 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 BMP8BP34820 402 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 GABRA3P34903 492 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 OMPP47874 163 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 SMSP52788 366 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF846Q147U1 533 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 MANEAQ5SRI9 462 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms