RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ROBO1Q9Y6N7 1651 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 A8MVM7 634 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF878C9JN71 531 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PROB1E7EW31 1015 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 K7ESM1 405 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 M0R233 179 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PPM1DO15297 605 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 BUD23O43709 281 aaKnown RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 DOK2O60496 412 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SEMA7AO75326 666 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ITGA10O75578 1167 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 GM2AP17900 193 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 POU3F3P20264 500 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 F2RP25116 425 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PTPN4P29074 926 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CRABP1P29762 137 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SSTR4P31391 388 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CXCR5P32302 372 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CASP5P51878 434 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CDH11P55287 796 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CLN3Q13286 438 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 EIF4EBP2Q13542 120 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 TSGA10IPQ3SY00 556 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 KCTD21Q4G0X4 260 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.85□□□□□ -1.79
USH2A-202ENST00000366942 METTL11BQ5VVY1 283 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 OR10T2Q8NGX3 314 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ADAMTS14Q8WXS8 1223 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CHCHD6Q9BRQ6 235 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 B3GNT5Q9BYG0 378 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SIAEQ9HAT2 523 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 GNB4Q9HAV0 340 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 DLL4Q9NR61 685 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CACFD1Q9UGQ2 172 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SLCO3A1Q9UIG8 710 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 DCTN4Q9UJW0 460 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ATXN7L1Q9ULK2 861 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 PXDNQ92626 1479 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 FAM237BA0A1B0GVD1 139 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 FAM149AA5PLN7 773 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 FFAR3O14843 346 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 GPR42O15529 346 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SPINT2O43291 252 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SLC37A4O43826 429 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 PCDH7O60245 1069 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ABHD16AO95870 558 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 UROSP10746 265 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CNR1P21554 472 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SERPINB5P36952 375 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 TSFMP43897 325 aaKnown RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 CLCN4P51793 760 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SLC12A3P55017 1021 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 MAZP56270 477 aaKnown RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 CMC4P56277 68 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF844Q08AG5 666 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CATR1Q13166 79 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 N4BP2L1Q5TBK1 243 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 ULK3Q6PHR2 472 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 CLNKQ7Z7G1 428 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 TCEANCQ8N8B7 351 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 OR4D9Q8NGE8 314 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SLC35G2Q8TBE7 412 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 AKAP1Q92667 903 aaKnown RBP eCLIP3.85□□□□□ -1.79
USH2A-202ENST00000366942 PHF21BQ96EK2 531 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 AURKBQ96GD4 344 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 C7orf50Q9BRJ6 194 aaKnown RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 RSRP1Q9BUV0 290 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 DDA1Q9BW61 102 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SLC5A7Q9GZV3 580 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SLC6A15Q9H2J7 730 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 RNF19AQ9NV58 838 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 GRHL1Q9NZI5 618 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ENPP5Q9UJA9 477 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 YBX2Q9Y2T7 364 aaKnown RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 ANKRD66B4E2M5 251 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SLC35E2P0CK97 266 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 BPIP17213 487 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 MAPK3P27361 379 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 NMBRP28336 390 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 GJA5P36382 358 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 LIMK2P53671 638 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZKSCAN8Q15776 578 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 SYT6Q5T7P8 510 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 DHRS7BQ6IAN0 325 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF554Q86TJ5 538 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 HAPLN4Q86UW8 402 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SATL1Q86VE3 508 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 C1orf174Q8IYL3 243 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF548Q8NEK5 533 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 OR4D6Q8NGJ1 314 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 C8orf46Q8TAG6 207 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ELP5Q8TE02 316 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF75CPQ92670 426 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 RFT1Q96AA3 541 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 MPP4Q96JB8 637 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 ZNF582Q96NG8 517 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 RNF157Q96PX1 679 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 GPR22Q99680 433 aa3.85□□□□□ -1.79
USH2A-202ENST00000366942 SEMA4BQ9NPR2 832 aaPredicted RBP3.85□□□□□ -1.79
USH2A-202ENST00000366942 GAR1Q9NY12 217 aaKnown RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms