RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 WDR45Q9Y484 360 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 SPIN1Q9Y657 262 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 FANCMQ8IYD8 2048 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 SMIM30A4D0T7 59 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 PLD2O14939 933 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 UBXN7O94888 489 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 NDUFV2P19404 249 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 SOX18P35713 384 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 CD79BP40259 229 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 EIF2B2P49770 351 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 GAS1P54826 345 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 SRP54P61011 504 aaKnown RBP17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 TSPAN31Q12999 210 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 MLLT11Q13015 90 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 ALG11Q2TAA5 492 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 GDF7Q7Z4P5 450 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 TRIM48Q8IWZ4 208 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 TM4SF19Q96DZ7 209 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 ADAP2Q9NPF8 381 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 KLHL28Q9NXS3 571 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 ACTR10Q9NZ32 417 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 SEC14L4Q9UDX3 406 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 DAPP1Q9UN19 280 aa17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 ZNF443Q9Y2A4 671 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-201ENST00000291842 LRRC72A6NJI9 287 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 B3GALT2O43825 422 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 MYL12AP19105 171 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 TNFSF8P32971 234 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 MAGEA10P43363 369 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 DBPQ10586 325 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 TYW3Q6IPR3 259 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 CDC73Q6P1J9 531 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 SLC36A4Q6YBV0 504 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 CCDC190Q86UF4 302 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 ZNF761Q86XN6 746 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 GALNT12Q8IXK2 581 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 ANKK1Q8NFD2 765 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 OR5T3Q8NGG3 340 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 OR9Q1Q8NGQ5 310 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 PIGXQ8TBF5 258 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 NPIPA5A0A0B4J1W7 369 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 ISPDA4D126 451 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 A6NCN8 305 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 NPIPA7E9PJI5 369 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 NPIPA8P0DM63 369 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 ACP2P11117 423 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 HNRNPA2B1P22626 353 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 PRKAR1BP31321 381 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 IFNGR2P38484 337 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 LSSP48449 732 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 TPMTP51580 245 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 KIR2DS3Q14952 304 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 SLC25A30Q5SVS4 291 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 HEPHL1Q6MZM0 1159 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 ZNF836Q6ZNA1 936 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 TRIM69Q86WT6 500 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 ZFP41Q8N8Y5 198 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 TMEM52Q8NDY8 209 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 OR4Q3Q8NH05 313 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 TM9SF4Q92544 642 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 SLC41A3Q96GZ6 507 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 SERINC2Q96SA4 455 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 PHOX2BQ99453 314 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 SDHCQ99643 169 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 RACGAP1Q9H0H5 632 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 TCEAL2Q9H3H9 227 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 SMURF1Q9HCE7 757 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 STARD5Q9NSY2 213 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 FBXO34Q9NWN3 711 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 TOR4AQ9NXH8 423 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 KLHL3Q9UH77 587 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 SLC7A7Q9UM01 511 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 SSR3Q9UNL2 185 aa17.14■□□□□ 0.33
SHKBP1-201ENST00000291842 DUXAA6NLW8 204 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 LOC110117498-PIK3R3F6TDL0 507 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 PRODHO43272 600 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 KCNK2O95069 426 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 ENDOUP21128 410 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 MTNR1AP48039 350 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 C22orf42Q6IC83 251 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 RASSF6Q6ZTQ3 369 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 LHFPL3Q86UP9 236 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 ZBTB8BQ8NAP8 495 aaPredicted RBP17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 RPLP0P6Q8NHW5 317 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 GPR151Q8TDV0 419 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 FAM3CQ92520 227 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 PIK3R3Q92569 461 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 NELL2Q99435 816 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 SLC30A2Q9BRI3 323 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 EVA1BQ9NVM1 165 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 PHF11Q9UIL8 331 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 PCOLCE2Q9UKZ9 415 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 HYKKA2RU49 373 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 ZNF670-ZNF695F2Z2N8 137 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 AQP9O43315 295 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 CDRT1O95170 752 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 SLC2A10O95528 541 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 APBB3O95704 486 aa17.13■□□□□ 0.33
SHKBP1-201ENST00000291842 CLEC2LP0C7M8 214 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms