RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	PSG6	Q00889	435 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	PDE7A	Q13946	482 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	EFR3A	Q14156	821 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	LSM12	Q3MHD2	195 aa	Known RBP	10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	FIGNL1	Q6PIW4	674 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	BNC2	Q6ZN30	1099 aa	Predicted RBP	10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	ANKRD46	Q86W74	232 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	CLEC4F	Q8N1N0	589 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	OR2L13	Q8N349	312 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	OR4A15	Q8NGL6	344 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	OR5P2	Q8WZ92	322 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	BTBD9	Q96Q07	612 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	ANGPTL4	Q9BY76	406 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	SLC6A15	Q9H2J7	730 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	ACBD3	Q9H3P7	528 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	MEAF6	Q9HAF1	191 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	SERHL	Q9NQF3	203 aa		10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	ACSS1	Q9NUB1	689 aa	Predicted RBP	10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	INTS9	Q9NV88	658 aa	Known RBP	10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	MRTO4	Q9UKD2	239 aa	Known RBP	10.12	□□□□□ -0.79
DDB1-222	ENST00000543627	FLNC	Q14315	2725 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	OR6C70	A6NIJ9	312 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	LRRC3C	A6NJW4	275 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	SLCO1B7	G3V0H7	640 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	T	O15178	435 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	TSPAN2	O60636	221 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	TBX19	O60806	448 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	SASH3	O75995	380 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	COL8A1	P27658	744 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	PRIM2	P49643	509 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	CLK3	P49761	638 aa	Known RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	PNLIPRP2	P54317	469 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	CASP9	P55211	416 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	UFM1	P61960	85 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	MRPS22	P82650	360 aa	Known RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	LASP1	Q14847	261 aa	Known RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	10.11	□□□□□ -0.79	1e-6	■■■■■ 28.8
DDB1-222	ENST00000543627	VPS26B	Q4G0F5	336 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	CYP27C1	Q4G0S4	372 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	GXYLT1	Q4G148	440 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	SLC9B1	Q4ZJI4	515 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	WIPI1	Q5MNZ9	446 aa	Predicted RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	SLC30A6	Q6NXT4	461 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	MYO7B	Q6PIF6	2116 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	TRIL	Q7L0X0	811 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	SPATA19	Q7Z5L4	167 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	FGD2	Q7Z6J4	655 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	MRGPRG	Q86SM5	289 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	YRDC	Q86U90	279 aa	Known RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	DOLPP1	Q86YN1	238 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	CLECL1	Q8IZS7	167 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	COX18	Q8N8Q8	333 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	CDRT4	Q8N9R6	151 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	RAB3IL1	Q8TBN0	382 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	FAM57A	Q8TBR7	257 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	PIWIL2	Q8TC59	973 aa	Known RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	RELT	Q969Z4	430 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	COQ8B	Q96D53	544 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	FAM120B	Q96EK7	910 aa	Known RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	THOC1	Q96FV9	657 aa	Known RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	CCDC120	Q96HB5	630 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	MS4A4E	Q96PG1	132 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	PHF12	Q96QT6	1004 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	SECISBP2	Q96T21	854 aa	Known RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	ZBTB18	Q99592	522 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	BHLHE41	Q9C0J9	482 aa	Predicted RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	CXorf36	Q9H7Y0	433 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	VIPAS39	Q9H9C1	493 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	PNPLA3	Q9NST1	481 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	FLRT3	Q9NZU0	649 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	FAF1	Q9UNN5	650 aa	Predicted RBP	10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	SLC6A5	Q9Y345	797 aa		10.11	□□□□□ -0.79
DDB1-222	ENST00000543627	CLEC18A	A5D8T8	446 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	ANKRD33B	A6NCL7	494 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	ABCB7	O75027	752 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	TRIM3	O75382	744 aa	Predicted RBP	10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	HMGN2	P05204	90 aa	Known RBP	10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	ACP2	P11117	423 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	HPGD	P15428	266 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	S100A3	P33764	101 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	KIR3DL1	P43629	444 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	RNF144A	P50876	292 aa	Predicted RBP	10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	DGKQ	P52824	942 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	PSMD4	P55036	377 aa	Known RBP	10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	OCRL	Q01968	901 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	DUSP5	Q16690	384 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	SMU1	Q2TAY7	513 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	EIPR1	Q53HC9	387 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	CCNJ	Q5T5M9	372 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	WLS	Q5T9L3	541 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	TIGD3	Q6B0B8	471 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	CLEC18B	Q6UXF7	455 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	RIMKLA	Q8IXN7	391 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	NATD1	Q8N6N6	113 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	GATS	Q8NAP1	163 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	CLEC18C	Q8NCF0	446 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	SLC16A11	Q8NCK7	471 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	VPS37A	Q8NEZ2	397 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	OR4K17	Q8NGC6	315 aa		10.1	□□□□□ -0.79
DDB1-222	ENST00000543627	OR10Q1	Q8NGQ4	319 aa		10.1	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 166.2 ms