RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF160Q9HCG1 818 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CRNNQ9UBG3 495 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 IL17BQ9UHF5 180 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PCDHGA3Q9Y5H0 932 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 GPC6Q9Y625 555 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 COL16A1Q07092 1604 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 TRIM49D1C9J1S8 452 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 AZIN1O14977 448 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 GYG2O15488 501 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CREG1O75629 220 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 TUSC2O75896 110 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CBX6O95503 412 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ADRB1P08588 477 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PIRTP0C851 137 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 MPC1LP0DKB6 136 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ANXA3P12429 323 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CD99P14209 185 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 FMO3P31513 532 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 IL2RGP31785 369 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PITPNBP48739 271 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 NOVP48745 357 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SCN1BQ07699 218 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 NFE2L1Q14494 772 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 P2RY14Q15391 338 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 OR1C1Q15619 314 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 LHX8Q68G74 356 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CXorf57Q6NSI4 855 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 VWA1Q6PCB0 445 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 BAIAP2L2Q6UXY1 529 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 FOXRED2Q8IWF2 684 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PARP8Q8N3A8 854 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SFRP1Q8N474 314 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 UPRTQ96BW1 309 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PIK3IP1Q96FE7 263 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 LMF1Q96S06 567 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 DCTN5Q9BTE1 182 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 NMUR2Q9GZQ4 415 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ANKRA2Q9H9E1 313 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SRA1Q9HD15 236 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 LUZP4Q9P127 313 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SLC35A3Q9Y2D2 325 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SNX11Q9Y5W9 270 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 A0A087WZY1 265 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 TMEM120BA0PK00 339 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SCAMP2O15127 329 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 SCGNO76038 276 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 STC2O76061 302 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 IL6P05231 212 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PNMTP11086 282 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ZNF16P17020 682 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 TFEBP19484 476 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 DUSP1P28562 367 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 HTR1EP28566 365 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PPP2CBP62714 309 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PPP2CAP67775 309 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 NRG1Q02297 640 aaPredicted RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 MVKQ03426 396 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 COX10Q12887 443 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PON3Q15166 354 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 RNPS1Q15287 305 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 CDHR3Q6ZTQ4 885 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CCDC28AQ8IWP9 274 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 OR5J2Q8NH18 312 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 HAVCR2Q8TDQ0 301 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 FGGYQ96C11 551 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 KIRREL1Q96J84 757 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 RANBP9Q96S59 729 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PITX2Q99697 317 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 MRPL57Q9BQC6 102 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 ZNF251Q9BRH9 671 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SLC46A2Q9BY10 475 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 CALHM2Q9HA72 323 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 GON4LQ3T8J9 2241 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 TGM6O95932 706 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ADORA3P0DMS8 318 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 COMTP21964 271 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SFTPDP35247 375 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SEC24CP53992 1094 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 RPL38P63173 70 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 GPR68Q15743 365 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SMAD1Q15797 465 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 ZNF628Q5EBL2 1059 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 EMBQ6PCB8 327 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 C20orf204Q6ZNR8 217 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 DPPA4Q7L190 304 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 WDSUB1Q8N9V3 476 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 C19orf18Q8NEA5 215 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ACMSDQ8TDX5 336 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 RRNAD1Q96FB5 475 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 TECTBQ96PL2 329 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 IFT27Q9BW83 186 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 PELI2Q9HAT8 420 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SIRT5Q9NXA8 310 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ZNF224Q9NZL3 707 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 COL20A1Q9P218 1284 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 ARMCX1Q9P291 453 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 GNG12Q9UBI6 72 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 FBXL4Q9UKA2 621 aa3.86□□□□□ -1.79
USH2A-202ENST00000366942 SF3B6Q9Y3B4 125 aaKnown RBP3.86□□□□□ -1.79
USH2A-202ENST00000366942 ARL5AQ9Y689 179 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms