RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SCIMPQ6UWF3 145 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 IKBIPQ70UQ0 350 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 LIX1LQ8IVB5 337 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 CCDC63Q8NA47 563 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 FAM83FQ8NEG4 500 aaPredicted RBP17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 PUM2Q8TB72 1066 aaKnown RBP eCLIP17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 KAT2AQ92830 837 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 TMBIM1Q969X1 311 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 EBPLQ9BY08 206 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 MYNNQ9NPC7 610 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 MIEF1Q9NQG6 463 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 TEP1Q99973 2627 aaKnown RBP17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 CSMD2Q7Z408 3487 aa17.4■□□□□ 0.38
CCDC28A-203ENST00000617445 MED12Q93074 2177 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 CD8B2A6NJW9 211 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 SYT5O00445 386 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 COQ9O75208 318 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 KRT4P19013 534 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 PNLIPRP2P54317 469 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 SLC18A2Q05940 514 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 EIPR1Q53HC9 387 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 LIPMQ5VYY2 423 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 FAM71E1Q6IPT2 247 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 SEM1Q6ZVN7 128 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 WDR53Q7Z5U6 358 aaPredicted RBP17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 TRMOQ9BU70 441 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 UGT2B28Q9BY64 529 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 CALHM2Q9HA72 323 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 FOLH1BQ9HBA9 442 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 FOXD3Q9UJU5 478 aaPredicted RBP17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 CAMK2AQ9UQM7 478 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 SLC6A5Q9Y345 797 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 MRPS18CQ9Y3D5 142 aaKnown RBP17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 F8P00451 2351 aa17.39■□□□□ 0.37
CCDC28A-203ENST00000617445 NPIPB8E9PQR5 432 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 SLC28A1O00337 649 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 PLOD2O00469 737 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 TSPAN2O60636 221 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 IFI6P09912 130 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 CPN1P15169 458 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 PRPH2P23942 346 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 IL12BP29460 328 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 KRTAP10-9P60411 292 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 RCAN2Q14206 197 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 WIPI1Q5MNZ9 446 aaPredicted RBP17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 NOXRED1Q6NXP6 359 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 ENPP6Q6UWR7 440 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 ARSKQ6UWY0 536 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 LARP4Q71RC2 724 aaKnown RBP eCLIP17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 PLCZ1Q86YW0 608 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 WDSUB1Q8N9V3 476 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 LRRN4CLQ8ND94 238 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 ZPLD1Q8TCW7 415 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 WDYHV1Q96HA8 205 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 ADOQ96SZ5 270 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 OR2B2Q9GZK3 357 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 GALNT9Q9HCQ5 603 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 DOCK7Q96N67 2140 aa17.38■□□□□ 0.37
CCDC28A-203ENST00000617445 NTSP30990 170 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 NCBP2P52298 156 aaKnown RBP eCLIP17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 CORO7P57737 925 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 MYBPHQ13203 477 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 FBXL19-AS1Q494R0 122 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 CYP27C1Q4G0S4 372 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 DESI1Q6ICB0 168 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 RNF165Q6ZSG1 346 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 YRDCQ86U90 279 aaKnown RBP17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 CDH24Q86UP0 819 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 SLC44A2Q8IWA5 706 aaPredicted RBP17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 RIBC1Q8N443 379 aaPredicted RBP17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 TNIP2Q8NFZ5 429 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 OR7G2Q8NG99 324 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 EPS8L3Q8TE67 593 aaKnown RBP17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 ANKRA2Q9H9E1 313 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 SERHLQ9NQF3 203 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 C19orf53Q9UNZ5 99 aaPredicted RBP17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 MAPRE3Q9UPY8 281 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 L3MBTL1Q9Y468 752 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 OR10H1Q9Y4A9 318 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 WIF1Q9Y5W5 379 aa17.37■□□□□ 0.37
CCDC28A-203ENST00000617445 MBD3L4A6NDZ8 208 aaPredicted RBP17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 MBD3L3A6NE82 208 aaPredicted RBP17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 MBD3L5A6NJ08 208 aaPredicted RBP17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 SMIM23A6NLE4 172 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 TTC36A6NLP5 189 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 RGS14O43566 566 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 TRIM13O60858 407 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 SEC22BO75396 215 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 JUNP05412 331 aaKnown RBP17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 CYP4B1P13584 511 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 SRD5A2P31213 254 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 ASCL1P50553 236 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 DLX5P56178 289 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 AAGABQ6PD74 315 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 NPSR1Q6W5P4 371 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 OR14L1PQ8NHC6 308 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 MBD3L2Q8NHZ7 208 aaPredicted RBP17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 CDC26Q8NHZ8 85 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 RNF138Q8WVD3 245 aa17.36■□□□□ 0.37
CCDC28A-203ENST00000617445 ZNF764Q96H86 408 aaPredicted RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms