RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 SETD7Q8WTS6 366 aaKnown RBP16.71■□□□□ 0.27
NUP54-205ENST00000507257 RAB8BQ92930 207 aa16.71■□□□□ 0.27
NUP54-205ENST00000507257 CCDC120Q96HB5 630 aa16.71■□□□□ 0.27
NUP54-205ENST00000507257 C7orf50Q9BRJ6 194 aaKnown RBP16.71■□□□□ 0.27
NUP54-205ENST00000507257 TBC1D17Q9HA65 648 aa16.71■□□□□ 0.27
NUP54-205ENST00000507257 LYARQ9NX58 379 aaKnown RBP16.71■□□□□ 0.27
NUP54-205ENST00000507257 SH2B3Q9UQQ2 575 aa16.71■□□□□ 0.27
NUP54-205ENST00000507257 YIPF1Q9Y548 306 aa16.71■□□□□ 0.27
NUP54-205ENST00000507257 MTCL1Q9Y4B5 1905 aaKnown RBP16.71■□□□□ 0.26
NUP54-205ENST00000507257 MEIKINA0A087WXM9 373 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 TRIM77I1YAP6 450 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 ACSL1P33121 698 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 SRP54P61011 504 aaKnown RBP16.7■□□□□ 0.26
NUP54-205ENST00000507257 IER5LQ5T953 404 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 BRAT1Q6PJG6 821 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 FGD2Q7Z6J4 655 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 LHFPL3Q86UP9 236 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 TMEM173Q86WV6 379 aaPredicted RBP16.7■□□□□ 0.26
NUP54-205ENST00000507257 RASGEF1AQ8N9B8 481 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 ADAMTS14Q8WXS8 1223 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 FOXJ1Q92949 421 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 SCAMP4Q969E2 229 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 CAMK1GQ96NX5 476 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 SMG9Q9H0W8 520 aaKnown RBP16.7■□□□□ 0.26
NUP54-205ENST00000507257 ANKRD19PQ9H560 264 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 EPHX3Q9H6B9 360 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 ENAMQ9NRM1 1142 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 ACSS1Q9NUB1 689 aaPredicted RBP16.7■□□□□ 0.26
NUP54-205ENST00000507257 NPTNQ9Y639 398 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 COL4A6Q14031 1691 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 CKAP5Q14008 2032 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 OBSL1O75147 1896 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 WASH3PC4AMC7 463 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 M0R3H8 397 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 LANCL1O43813 399 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 APOL3O95236 402 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 CELF2O95319 508 aaKnown RBP16.7■□□□□ 0.26
NUP54-205ENST00000507257 SULT1A3P0DMM9 295 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 SULT1A4P0DMN0 295 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 PPP2R1BP30154 601 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 HTR1FP30939 366 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 CTSCP53634 463 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 POU6F2P78424 691 aaPredicted RBP16.7■□□□□ 0.26
NUP54-205ENST00000507257 CAMK2DQ13557 499 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 TAF1CQ15572 869 aaPredicted RBP16.7■□□□□ 0.26
NUP54-205ENST00000507257 ZNF322Q6U7Q0 402 aaPredicted RBP16.7■□□□□ 0.26
NUP54-205ENST00000507257 HTR3DQ70Z44 454 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 HSD11B1LQ7Z5J1 315 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 ADGRD2Q7Z7M1 963 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 ASPGQ86U10 573 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 OR8D4Q8NGM9 314 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 ZNF461Q8TAF7 563 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 SECISBP2Q96T21 854 aaKnown RBP16.7■□□□□ 0.26
NUP54-205ENST00000507257 MRPL9Q9BYD2 267 aaKnown RBP16.7■□□□□ 0.26
NUP54-205ENST00000507257 ZDHHC6Q9H6R6 413 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 ZNF222Q9UK12 451 aa16.7■□□□□ 0.26
NUP54-205ENST00000507257 PRAMEF27A3QJZ7 478 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 SNAPC5O75971 98 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 TCRBP04435 133 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 TFPIP10646 304 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 UGT2B7P16662 529 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 THBS2P35442 1172 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 MMP12P39900 470 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 EXOSC2Q13868 293 aaKnown RBP16.69■□□□□ 0.26
NUP54-205ENST00000507257 COMTD1Q86VU5 262 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 TPRA1Q86W33 373 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 CMIPQ8IY22 773 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 MMP21Q8N119 569 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 PCSK9Q8NBP7 692 aaKnown RBP16.69■□□□□ 0.26
NUP54-205ENST00000507257 LSM14AQ8ND56 463 aaKnown RBP16.69■□□□□ 0.26
NUP54-205ENST00000507257 OR9A1PQ8NGU1 263 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 BCL7CQ8WUZ0 217 aaPredicted RBP16.69■□□□□ 0.26
NUP54-205ENST00000507257 SPRYD4Q8WW59 207 aaPredicted RBP16.69■□□□□ 0.26
NUP54-205ENST00000507257 TM4SF18Q96CE8 201 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 ZNF578Q96N58 590 aaPredicted RBP16.69■□□□□ 0.26
NUP54-205ENST00000507257 SLC22A12Q96S37 553 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 TEX12Q9BXU0 123 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 SERHL2Q9H4I8 314 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 EGLN3Q9H6Z9 239 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 NUDT15Q9NV35 164 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 TNFRSF10DQ9UBN6 386 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 SCP2D1Q9UJQ7 156 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 CLEC4EQ9ULY5 219 aa16.69■□□□□ 0.26
NUP54-205ENST00000507257 TEX13CA0A0J9YWL9 993 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 J3QRE1 110 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 ZNF250P15622 560 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 ENPP1P22413 925 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 HOXD10P28358 340 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 FZD5Q13467 585 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 LGALSLQ3ZCW2 172 aaPredicted RBP16.68■□□□□ 0.26
NUP54-205ENST00000507257 SPDYE7PQ495Y7 208 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 TJAP1Q5JTD0 557 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 PRAMEF8Q5VWM4 474 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 PRAMEF7Q5VXH5 474 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 FAM122CQ6P4D5 195 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 GDPD4Q6W3E5 623 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 LILRA3Q8N6C8 439 aaPredicted RBP16.68■□□□□ 0.26
NUP54-205ENST00000507257 TOR1AIP2Q8NFQ8 470 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 OSTF1Q92882 214 aa16.68■□□□□ 0.26
NUP54-205ENST00000507257 GLYATL1Q969I3 302 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms