RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 GHRLQ9UBU3 117 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 ZNF346Q9UL40 294 aaKnown RBP6.09□□□□□ -1.43
NUP54-215ENST00000514313 FBXO7Q9Y3I1 522 aa6.09□□□□□ -1.43
NUP54-215ENST00000514313 KDRP35968 1356 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 IGLV7-46A0A075B6I9 117 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 TRGV8A0A0C4DH27 118 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 MCF2LO15068 1137 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 SDC3O75056 442 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 IGHG1P01857 330 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 IQCF3P0C7M6 154 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 ATP6V1C1P21283 382 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 CALML3P27482 149 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 SAA4P35542 130 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 NDUFV3P56181 108 aaKnown RBP6.08□□□□□ -1.44
NUP54-215ENST00000514313 ACTR1AP61163 376 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 HAND2P61296 217 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 SRPXP78539 464 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 TFDP1Q14186 410 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 LINC01620Q4KN68 170 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 BEND6Q5SZJ8 279 aaPredicted RBP6.08□□□□□ -1.44
NUP54-215ENST00000514313 AGAP7PQ5VUJ5 663 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 CENPUQ71F23 418 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 Q7L0L9 218 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 FAM131BQ86XD5 332 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 SAMD12Q8N8I0 201 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 SLC5A11Q8WWX8 675 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 OSTF1Q92882 214 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 RAB3CQ96E17 227 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 CASD1Q96PB1 797 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 ZSCAN5AQ9BUG6 496 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 POLR1EQ9GZS1 481 aaKnown RBP6.08□□□□□ -1.44
NUP54-215ENST00000514313 LPAR2Q9HBW0 351 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 ADGRL4Q9HBW9 690 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 SEC14L4Q9UDX3 406 aa6.08□□□□□ -1.44
NUP54-215ENST00000514313 XPO7Q9UIA9 1087 aaKnown RBP6.08□□□□□ -1.44
NUP54-215ENST00000514313 RNF212BA8MTL3 300 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 SPAG6O75602 509 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 SORBS2O94875 1100 aaKnown RBP6.07□□□□□ -1.44
NUP54-215ENST00000514313 IGSF6O95976 241 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 CSF2P04141 144 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 RPA2P15927 270 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 ZNF10P21506 573 aaPredicted RBP6.07□□□□□ -1.44
NUP54-215ENST00000514313 CA8P35219 290 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 VCPP55072 806 aaKnown RBP6.07□□□□□ -1.44
NUP54-215ENST00000514313 MS4A18Q3C1V0 323 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 TMEM110Q86TL2 294 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 VASH2Q86V25 355 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 Q8NBF4 154 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 OR5AU1Q8NGC0 362 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 HCAR2Q8TDS4 363 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 BARHL1Q9BZE3 327 aa6.07□□□□□ -1.44
NUP54-215ENST00000514313 DCAF13Q9NV06 445 aaKnown RBP6.07□□□□□ -1.44
NUP54-215ENST00000514313 SALL1Q9NSC2 1324 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 NPIPA5A0A0B4J1W7 369 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 CLRN2A0PK11 232 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.06□□□□□ -1.44
NUP54-215ENST00000514313 NPIPA5E9PKD4 350 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.06□□□□□ -1.44
NUP54-215ENST00000514313 RIPK2O43353 540 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 IDH3BO43837 385 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 JAK2O60674 1132 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 ZG16O60844 167 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 PDE5AO76074 875 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 UFL1O94874 794 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 UQCRBP14927 111 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 OTX2P32243 289 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 METAP1P53582 386 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 CNTN2Q02246 1040 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 ZNF85Q03923 595 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 BNIP1Q12981 228 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 CHIT1Q13231 466 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 MAJINQ3KP22 176 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 LRRTM1Q86UE6 522 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 FAM133AQ8N9E0 248 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 OR52J3Q8NH60 311 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 DNASE2BQ8WZ79 361 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 C19orf43Q9BQ61 176 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 RPP25Q9BUL9 199 aaKnown RBP6.06□□□□□ -1.44
NUP54-215ENST00000514313 TBC1D10AQ9BXI6 508 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 TSPY26PQ9H489 355 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 GPN2Q9H9Y4 310 aaPredicted RBP6.06□□□□□ -1.44
NUP54-215ENST00000514313 KLRF1Q9NZS2 232 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 EXTL2Q9UBQ6 330 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 ASIC3Q9UHC3 531 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 AP4B1Q9Y6B7 739 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 FER1L5A0AVI2 2057 aa6.06□□□□□ -1.44
NUP54-215ENST00000514313 WASHC1A8K0Z3 465 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 A8MUI8 341 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 NPIPA2E9PIF3 369 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 K7EQM0 130 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 PDLIM1O00151 329 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 NEBLO76041 1014 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 TM7SF2O76062 418 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 ANP32DO95626 131 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 UGT2B4P06133 528 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 FCGR3AP08637 254 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 GLRA2P23416 452 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 GPM6BQ13491 265 aa6.05□□□□□ -1.44
NUP54-215ENST00000514313 SIX1Q15475 284 aaPredicted RBP6.05□□□□□ -1.44
NUP54-215ENST00000514313 CD226Q15762 336 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms