RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 NUP43Q8NFH3 380 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 OR5L2Q8NGL0 311 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 GOT1L1Q8NHS2 421 aaPredicted RBP27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 TTC9Q92623 222 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 ARHGAP9Q9BRR9 750 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 TEKT2Q9UIF3 430 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 KMT2BQ9UMN6 2715 aaPredicted RBP27.45■■□□□ 1.98
LIMCH1-211ENST00000509638 C2orf92A0A1B0GVN3 265 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 FAM87AP0C7U9 286 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 CCT3P49368 545 aaKnown RBP27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 TP53BP2Q13625 1128 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 ACER2Q5QJU3 275 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 RPS19BP1Q86WX3 136 aaKnown RBP27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 CLEC4FQ8N1N0 589 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 ANKS4BQ8N8V4 417 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 OR56A1Q8NGH5 318 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 GTF2H4Q92759 462 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 VSTM2LQ96N03 204 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 CDCP1Q9H5V8 836 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 FOLH1BQ9HBA9 442 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 MYOTQ9UBF9 498 aa27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 PCDHGA9Q9Y5G4 932 aaKnown RBP27.44■■□□□ 1.98
LIMCH1-211ENST00000509638 WWP2O00308 870 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 ANGPT2O15123 496 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 ALPPP05187 535 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 TLR1Q15399 786 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 NNATQ16517 81 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 HLA-DQA1Q5Y7H0 255 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 LINC00696Q6ZRV3 163 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 LGI4Q8N135 537 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 ARMC10Q8N2F6 343 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 MOAP1Q96BY2 351 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 CCDC106Q9BWC9 280 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 VPS4AQ9UN37 437 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 GIMAP1-GIMAP5A0A087WTJ2 511 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 DCTN3O75935 186 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 GSNP06396 782 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 MAPRE2Q15555 327 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 MEP1AQ16819 746 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 PAGE3Q5JUK9 113 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 ABHD17BQ5VST6 288 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 ISLR2Q6UXK2 745 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 SNX32Q86XE0 403 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 ZNF441Q8N8Z8 693 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 TSPEARQ8WU66 669 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 ADIPOR1Q96A54 375 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 GIMAP5Q96F15 307 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 ZNF354BQ96LW1 612 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 SLC6A13Q9NSD5 602 aa27.43■■□□□ 1.98
LIMCH1-211ENST00000509638 EXPH5Q8NEV8 1989 aa27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 ITGA10O75578 1167 aa27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 OR2J2O76002 312 aa27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 MLF1P58340 268 aa27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 KCNAB2Q13303 367 aa27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 WDR53Q7Z5U6 358 aaPredicted RBP27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 BEST3Q8N1M1 668 aa27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 TRIML2Q8N7C3 387 aa27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 FBXO30Q8TB52 745 aa27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 SLC35A5Q9BS91 424 aa27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 LEF1Q9UJU2 399 aaPredicted RBP27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 NDUFAF1Q9Y375 327 aa27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 TLN1Q9Y490 2541 aaKnown RBP27.42■■□□□ 1.98
LIMCH1-211ENST00000509638 ERN1O75460 977 aaKnown RBP27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 ANP32DO95626 131 aa27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 UQCRC2P22695 453 aa27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 CORO7P57737 925 aa27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 MFSD12Q6NUT3 480 aa27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 ZNF621Q6ZSS3 439 aa27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 TREML1Q86YW5 311 aa27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 BTBD9Q96Q07 612 aa27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 LRRC37BQ96QE4 947 aa27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 SMAD5Q99717 465 aaKnown RBP27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 NXF5Q9H1B4 397 aaKnown RBP27.41■■□□□ 1.98
LIMCH1-211ENST00000509638 HMGN2P05204 90 aaKnown RBP27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 PTPN6P29350 595 aa27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 TRPC1P48995 793 aa27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 MFAP5Q13361 173 aa27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 LASP1Q14847 261 aaKnown RBP27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 GTDC1Q4AE62 458 aa27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 BHLHB9Q6PI77 547 aa27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 RETREG3Q86VR2 466 aa27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 POU5F2Q8N7G0 328 aa27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 C17orf47Q8NEP4 570 aa27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 ABHD17AQ96GS6 310 aa27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 PAIP1Q9H074 479 aaKnown RBP27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 ZBTB20Q9HC78 741 aaPredicted RBP27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 BSNQ9UPA5 3926 aa27.4■■□□□ 1.98
LIMCH1-211ENST00000509638 A0A096LPI6 279 aa27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 CHI3L1P36222 383 aaPredicted RBP27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 ST13P50502 369 aaKnown RBP27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 NR0B1P51843 470 aaKnown RBP27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 NPSR1Q6W5P4 371 aa27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 JADE3Q92613 823 aa27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 RASL10BQ96S79 203 aa27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 GPATCH2Q9NW75 528 aa27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 ABI3Q9P2A4 366 aa27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 IGSF10Q6WRI0 2623 aa27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 ATRXP46100 2492 aa27.39■■□□□ 1.98
LIMCH1-211ENST00000509638 LOC100653049A0A140TA62 436 aa27.39■■□□□ 1.97
LIMCH1-211ENST00000509638 FBP2O00757 339 aa27.39■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 148.8 ms